Sphingomonas sp. (DSM 102755, Leaf230)

Name: Sphingomonas sp. (DSM 102755, Leaf230)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131972

Type strain

Strain Designation Leaf230

Culture col. no. DSM 102755 Leaf230

NCBI tax ID(s) 28214

Special Collections DSMZ Arabidopsis

History DSMZ <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf230 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

Links

Leaf230 is a bacterium that was isolated from leaf of wild type Arabidopsis thaliana.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 402918

DSM 102755

@ref 20215

Last LPSN update 2026-05-29 08:37:44

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingomonadaceae

Genus Sphingomonas

Full scientific name Sphingomonas Yabuuchi et al. 1990

Synonyms (18)

Alterirhizorhabdus
Paraquisediminimonas
Novistakelama
Parastakelama
Alteristakelama
Pseudostakelama
Alterisphingomonas
Solisphingomonas
Parayabuuchia
Humisphingomonas
Pseudosphingomonas
Neorhizorhabdus
Parasphingomonas
Flavisphingomonas
Edaphosphingomonas
Pararhizorhabdus
Alteriyabuuchia
Alterisphingopyxis

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	94.833

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
23764	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
23764	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.289

Spore formation

@ref	Spore formation	Confidence
125439		96.37

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
23764	leaf of wild type Arabidopsis thaliana	Arabidopsis thaliana	Hoengg (47.4090306N 8.470169444E)	Switzerland	CHE	Europe	47.409	8.4702 47.409/8.4702

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Leaf230 assembly for Sphingomonas sp. Leaf230	scaffold	GCA_001421745	1735694.3	2643221760	1735694	76.08

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Leaf230 assembly for Sphingomonas sp. Leaf230
BV-BRC: 1735694.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.29	no
125439	gram_stain	BacteriaNetⓘ	negative	83.88	no
125439	motility	BacteriaNetⓘ	no	66.01	no
125439	spore_formation	BacteriaNetⓘ	no	96.37	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sphingomonas sp. Leaf230 Leaf230
NCBI: GCA_001421745.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	94.83	no
125438	anaerobic	anaerobicⓘ	no	95.48	no
125438	aerobic	aerobicⓘ	yes	89.72	no
125438	spore-forming	spore-formingⓘ	no	89.23	no
125438	thermophilic	thermophileⓘ	no	97.08	yes
125438	flagellated	motile2+ⓘ	yes	72.24	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23764	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102755
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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