Strain identifier

BacDive ID: 131972

Type strain: No

Species: Sphingomonas sp.

Strain Designation: Leaf230

Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf230 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

NCBI tax ID(s): 28214 (species)

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General

@ref: 23764

BacDive-ID: 131972

DSM-Number: 102755

keywords: genome sequence, Bacteria, mesophilic

description: Sphingomonas sp. Leaf230 is a mesophilic bacterium that was isolated from leaf of wild type Arabidopsis thaliana.

NCBI tax id

  • NCBI tax id: 28214
  • Matching level: species

strain history

  • @ref: 23764
  • history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf230 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

doi: 10.13145/bacdive131972.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Sphingomonadaceae
  • genus: Sphingomonas
  • species: Sphingomonas sp.
  • full scientific name: Sphingomonas Yabuuchi et al. 1990

@ref: 23764

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Pseudomonadales

family: Sphingomonadaceae

genus: Sphingomonas

species: Sphingomonas sp.

full scientific name: Sphingomonas sp.

strain designation: Leaf230

type strain: no

Culture and growth conditions

culture medium

  • @ref: 23764
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 23764
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 23764
  • sample type: leaf of wild type Arabidopsis thaliana
  • host species: Arabidopsis thaliana
  • geographic location: Hoengg (47.4090306N 8.470169444E)
  • country: Switzerland
  • origin.country: CHE
  • continent: Europe
  • latitude: 47.409
  • longitude: 8.4702

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Leaf (Phyllosphere)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sphingomonas sp. Leaf230GCA_001421745scaffoldncbi1735694
66792Sphingomonas sp. Leaf2301735694.3wgspatric1735694
66792Sphingomonas sp. Leaf2302643221760draftimg1735694

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno90.533no
gram-positiveno97.345no
anaerobicno99.096no
aerobicyes93.585no
halophileno94.371no
spore-formingno94.965no
thermophileno99.462yes
glucose-utilyes90.875no
motileyes82.893no
glucose-fermentno89.186no

External links

@ref: 23764

culture collection no.: DSM 102755

straininfo link

  • @ref: 90359
  • straininfo: 402918

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23764Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102755Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102755)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
90359Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402918.1