Name: Sphingomonas sp. HH69
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14205

Type strain:

Species: Sphingomonas sp.

Strain Designation: HH69

Culture col. no.: DSM 7135, CCUG 31190

Strain history: <- B. Happe, Ges.Biotechn. Forschg.; HH69-3 <- H. Poth <- H. Harms; HH69 (Pseudomonas sp.)

NCBI tax ID(s): 28214 (species)

SI-ID 48369

CCUG 31190, DSM 7135, KCTC 12178

Other strains from Sphingomonas sp.

S. sp. JCM 19859, KCTC 42061 (type strain)
S. sp. DSM 3298, ATCC 21764, IFO 13215, ...
S. sp. DAK3, DSM 7356
S. sp. BF2, DSM 9260
S. sp. P5, DSM 11620
S. sp. RW5, DSM 12401
S. sp. 10-1, DSM 12247
S. sp. M1L7, DSM 16543
S. sp. B1ZH1, DSM 16544
S. sp. SC-N048, DSM 21915
S. sp. SC-N060, DSM 21917
S. sp. ES1-132-2, DSM 30514
S. sp. BF14, DSM 9257, ACM 4962
S. sp. ST033204(HKI),
S. sp. ST033392(HKI),
S. sp. ST022289(HKI), F116, BI 11505, ...
S. sp. SF004733(FSU),
S. sp. SF004735(FSU),
S. sp. SF004741(FSU),
S. sp. SF004742(FSU),
S. sp. SF004743(FSU),
S. sp. 5.2, DSM 24959
S. sp. EL-56, DSM 11474
S. sp. LnR5-44, DSM 21012
S. sp. DSM 22213, CCTCC AA 209011, JSM ...
S. sp. Root710, DSM 102538
S. sp. Root720, DSM 102539
S. sp. Root1294, DSM 102535
S. sp. Root241, DSM 102536
S. sp. Root50, DSM 102537
S. sp. Leaf28, DSM 102724
S. sp. Leaf17, DSM 102725
S. sp. Leaf343, DSM 102726
S. sp. Leaf30, DSM 102727
S. sp. Leaf21, DSM 102728
S. sp. Leaf4, DSM 102729
S. sp. Leaf16, DSM 102730
S. sp. Leaf32, DSM 102731
S. sp. Leaf357, DSM 102732
S. sp. Leaf33, DSM 102733
S. sp. Leaf34, DSM 102734
S. sp. Leaf10, DSM 102735
S. sp. Leaf20, DSM 102736
S. sp. Leaf9, DSM 102737
S. sp. Leaf37, DSM 102738
S. sp. Leaf11, DSM 102739
S. sp. Leaf339, DSM 102740
S. sp. Leaf38, DSM 102741
S. sp. Leaf62, DSM 102742
S. sp. Leaf231, DSM 102743
S. sp. Leaf242, DSM 102744
S. sp. Leaf67, DSM 102745
S. sp. Leaf25, DSM 102746
S. sp. Leaf198, DSM 102747
S. sp. Leaf23, DSM 102748
S. sp. Leaf5, DSM 102749
S. sp. Leaf24, DSM 102750
S. sp. Leaf205, DSM 102751
S. sp. Leaf407, DSM 102752
S. sp. Leaf42, DSM 102753
S. sp. Leaf208, DSM 102754
S. sp. Leaf230, DSM 102755
S. sp. Leaf22, DSM 102756
S. sp. Leaf412, DSM 102757
S. sp. Leaf29, DSM 102758
S. sp. Leaf226, DSM 102759
S. sp. Leaf257, DSM 102760
S. sp. D2_1, DSM 103740
S. sp. D18-1, DSM 103749
S. sp. CIP 107349
S. sp. CCUG 18318, LMG 9555
S. sp. CCUG 23675
S. sp. CCUG 24024
S. sp. CCUG 24103
S. sp. CCUG 27330
S. sp. CCUG 30190
S. sp. CCUG 30619
S. sp. CCUG 30978
S. sp. CCUG 31191
S. sp. CCUG 31199, RM 4
S. sp. CCUG 31200
S. sp. CCUG 31206
S. sp. CCUG 31438
S. sp. CCUG 31493
S. sp. CCUG 31521
S. sp. CCUG 31772
S. sp. CCUG 31773
S. sp. CCUG 32008
S. sp. CCUG 32543
S. sp. CCUG 33269
S. sp. CCUG 33747
S. sp. CCUG 34124
S. sp. CCUG 35843
S. sp. CCUG 36830
S. sp. CCUG 36955, DSMZ ID 97-002
S. sp. CCUG 36958
S. sp. CCUG 36960
S. sp. CCUG 38135
S. sp. CCUG 38233
S. sp. CCUG 38824
S. sp. CCUG 39394
S. sp. CCUG 41850
S. sp. CCUG 41856 C
S. sp. CCUG 41903 C
S. sp. CCUG 42010 B
S. sp. CCUG 42678 C
S. sp. CCUG 43355
S. sp. CCUG 43396
S. sp. CCUG 43484
S. sp. CCUG 44446
S. sp. CCUG 44447
S. sp. CCUG 53622
S. sp. CCUG 56523 A
S. sp. CCUG 58318
S. sp. CCUG 59592
S. sp. CCUG 59723
S. sp. CCUG 60483
S. sp. CCUG 61596
S. sp. JCM 10459
S. sp. JCM 14771, KCTC 12897
S. sp. JCM 14772, KCTC 12898
S. sp. JCM 15505
S. sp. JCM 17075
S. sp. JCM 17462
S. sp. JCM 17541, KCTC 23327
S. sp. JCM 18016, KCTC 23762
S. sp. JCM 21328, IAM 14822
S. sp. JCM 21330, IAM 14824
S. sp. JCM 21331, IAM 14825
S. sp. JCM 21332, IAM 14826
S. sp. T19, DSM 103178

Section

Sphingomonas sp. HH69 is a mesophilic bacterium that was isolated from farmland and forest soil.

mesophilic
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingomonas*
	Full Scientific Name (LPSN)	Sphingomonas Yabuuchi et al. 1990

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2899]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #2899]

Culture medium growth

[Ref.: #2899]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2899]

Culture medium composition

expand / minimize

[Ref.: #2899]

Culture medium

MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457)

[Ref.: #2899]

Culture medium growth

[Ref.: #2899]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2899]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2899]			growth	30 °C

[Ref.: #2899]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #50468]

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	59.7	17.824
C16:1 ω7c	15.2	15.819
C16:0	8.7	16
C14:0 2OH	7.8	15.205
C18:1 ω5c	4.4	17.919
C16:1 ω5c	2.9	15.908
C16:0 2OH	1.4	17.233

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #50468]	7589	+	-	-	-	-	+	-	+	+	-	-	-	-	+	-	-	-	-	+	-	-
[Ref.: #2899]	23175	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #50468]	3849	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2899]	Sample type/isolated from	farmland and forest soil
[Ref.: #2899]	Geographic location (country and/or sea, region)	near Hamburg
[Ref.: #2899]	Country	Germany
[Ref.: #2899]	Country ISO 3 Code	DEU
[Ref.: #2899]	Continent	Europe

[Ref.: #50468]	Sample type/isolated from	Soil,noncontaminated,enrichment with dibenzofuran
[Ref.: #50468]	Sampling date	1987-10-01
[Ref.: #50468]	Geographic location (country and/or sea, region)	near Limburg
[Ref.: #50468]	Country	Germany
[Ref.: #50468]	Country ISO 3 Code	DEU
[Ref.: #50468]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	-
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

[Ref.: #2899]

GC-content

61.0 mol%

Availability in culture collections External links

[Ref.: #2899]

Culture collection no.

DSM 7135, CCUG 31190

[Ref.: #83364]

SI-ID 48369

References

#2899

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7135

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#50468 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 31190

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#83364

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48369.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Sphingomonas sp. in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF