Sphingomonas sp. (DSM 11620, P5)

Name: Sphingomonas sp. (DSM 11620, P5)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14210

Type strain

Strain Designation P5

Culture col. no. DSM 11620 P5

NCBI tax ID(s) 28214

Special Collections DSMZ

History DSMZ <- A.M. Breure <- Y.P.C.M. van Gerstel, RIVM Bilthoven; P5

Links

P5 is a bacterium of the family Sphingomonadaceae.

Bacteria

Name and taxonomic classification

SI-ID 49146

DSM 11620

@ref 20215

Last LPSN update 2026-05-29 08:28:14

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingomonadaceae

Genus Sphingomonas

Full scientific name Sphingomonas Yabuuchi et al. 1990

Synonyms (18)

Alterirhizorhabdus
Paraquisediminimonas
Novistakelama
Parastakelama
Alteristakelama
Pseudostakelama
Alterisphingomonas
Solisphingomonas
Parayabuuchia
Humisphingomonas
Pseudosphingomonas
Neorhizorhabdus
Parasphingomonas
Flavisphingomonas
Edaphosphingomonas
Pararhizorhabdus
Alteriyabuuchia
Alterisphingopyxis

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4241	NUTRIENT AGAR (OXOID CM3) (DSMZ Medium 605)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (OXOID CM3) (DSMZ Medium 605) Composition: Agar 15.0 g/l NaCl 5.0 g/l Peptone 5.0 g/l Yeast extract 2.0 g/l Lab-Lemco beef extract 1.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
4241	positive	growth	30

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
4241	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	+	-	-	-	-	+

Isolation, sampling and environmental information

Isolation

@ref	Country	Country ISO 3 Code	Continent
4241	Netherlands	NLD	Europe

Interaction and safety

Sequence information

Genome-based predictions

Literature

References

#4241	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11620
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#68369	Automatically annotated from API 20NE .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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