Strain identifier
BacDive ID: 14210
Type strain: 
Species: Sphingomonas sp.
Strain Designation: P5
Strain history: <- A.M. Breure <- Y.P.C.M. van Gerstel, RIVM Bilthoven; P5
NCBI tax ID(s): 28214 (species)
version 8.1 (current version)
General
@ref: 4241
BacDive-ID: 14210
DSM-Number: 11620
keywords: Bacteria, mesophilic
description: Sphingomonas sp. P5 is a mesophilic bacterium of the family Sphingomonadaceae.
NCBI tax id
- NCBI tax id: 28214
- Matching level: species
strain history
- @ref: 4241
- history: <- A.M. Breure <- Y.P.C.M. van Gerstel, RIVM Bilthoven; P5
doi: 10.13145/bacdive14210.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Sphingomonadaceae
- genus: Sphingomonas
- species: Sphingomonas sp.
- full scientific name: Sphingomonas Yabuuchi et al. 1990
@ref: 4241
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Sphingomonadaceae
genus: Sphingomonas
species: Sphingomonas sp.
full scientific name: Sphingomonas sp.
strain designation: P5
type strain: no
Culture and growth conditions
culture medium
- @ref: 4241
- name: NUTRIENT AGAR (OXOID CM3) (DSMZ Medium 605)
- growth: yes
- link: https://mediadive.dsmz.de/medium/605
- composition: Name: NUTRIENT AGAR (OXOID CM3) (DSMZ Medium 605) Composition: Agar 15.0 g/l NaCl 5.0 g/l Peptone 5.0 g/l Yeast extract 2.0 g/l Lab-Lemco beef extract 1.0 g/l Distilled water
culture temp
- @ref: 4241
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | - | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | + | assimilation |
| 68369 | 24265 | gluconate | - | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | - | assimilation |
| 68369 | 16899 | D-mannitol | - | assimilation |
| 68369 | 16024 | D-mannose | - | assimilation |
| 68369 | 30849 | L-arabinose | - | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | + | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | + | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4241 | - | - | - | - | - | + | - | - | + | - | - | - | - | - | - | + | - | - | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 4241
- country: Netherlands
- origin.country: NLD
- continent: Europe
External links
@ref: 4241
culture collection no.: DSM 11620
straininfo link
- @ref: 83369
- straininfo: 49146
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4241 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11620) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11620 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 68369 | Automatically annotated from API 20NE | |||
| 83369 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49146.1 | StrainInfo: A central database for resolving microbial strain identifiers |