Name: Staphylococcus epidermidis McC-251-APC-2A
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159055

Type strain:

Species: Staphylococcus epidermidis

Strain Designation: McC-251-APC-2A

Culture col. no.: DSM 106280

Strain history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; McC-251-APC-2A

NCBI tax ID(s): 1282 (species)

SI-ID 402960

DSM 106280

Special Collections

Other strains from Staphylococcus epidermidis

Section

Staphylococcus epidermidis McC-251-APC-2A is a Gram-positive bacterium that was isolated from feces; pig, 10 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.

Gram-positive
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Staphylococcus*
	Species	**Staphylococcus epidermidis**
	Full Scientific Name (LPSN)	Staphylococcus epidermidis (Winslow and Winslow 1908) Evans 1916 (Approved Lists 1980)

Synonym

"Albococcus epidermidis"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65878]

Culture medium

WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)

[Ref.: #65878]

Culture medium growth

[Ref.: #65878]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65878]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65878]			growth	37 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65878]	Sample type/isolated from	feces; pig, 10 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein
[Ref.: #65878]	Geographic location (country and/or sea, region)	Kranzberg (Bavaria)
[Ref.: #65878]	Country	Germany
[Ref.: #65878]	Country ISO 3 Code	DEU
[Ref.: #65878]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MN537511 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	284
Soil Samples	44
Animal Samples	8287
Plant Samples	18
Total Samples	8633

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65878]	Staphylococcus sp. strain DSM 106280 16S ribosomal RNA gene, partial sequence	MN537511	1443	GenBank ENA	29387 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Staphylococcus epidermidis McC-251-APC-2A	GCA_012843325	contig	GenBank ENA	1282 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Staphylococcus epidermidis McC-251-APC-2A NCBI: GCA_012843325.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	87.254	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.729	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	52.922	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	76.253	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.192	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	83.554	no

Availability in culture collections External links

[Ref.: #65878]

Culture collection no.

DSM 106280

[Ref.: #111569]

SI-ID 402960

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65878

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106280

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111569

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402960.1 )

* These data were automatically processed and therefore are not curated

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