Staphylococcus epidermidis (DSM 106280, McC-251-APC-2A)

Name: Staphylococcus epidermidis (DSM 106280, McC-251-APC-2A)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159055

Type strain

Strain Designation McC-251-APC-2A

Culture col. no. DSM 106280 McC-251-APC-2A

NCBI tax ID(s) 1282

Special Collections DSMZ Pig DZIF

History DSMZ <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; McC-251-APC-2A

Links

Staphylococcus epidermidis McC-251-APC-2A is a bacterium that was isolated from feces; pig, 10 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 402960

DSM 106280

@ref 20215

Last LPSN update 2026-05-29 08:44:06

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Staphylococcaceae

Genus Staphylococcus

Species Staphylococcus epidermidis

Full scientific name Staphylococcus epidermidis (Winslow and Winslow 1908) Evans 1916 (Approved Lists 1980)

Synonyms (1)

"Albococcus epidermidis"

BacDive ID	Other strains from **Staphylococcus epidermidis** (118)	Type strain
14529	S. epidermidis Fussel, DSM 20044, ATCC 14990, CCM 2124, ... (type strain)
14522	S. epidermidis DSM 1798, ATCC 12228, WDCM 00036, CCUG 21989, ...
14523	S. epidermidis KH 11, DSM 3269, PCM 2479
14524	S. epidermidis V 2, DSM 3270, PCM 2480
14525	S. epidermidis NT 286, DSM 4851
14526	S. epidermidis GH 561, DSM 8913
14527	S. epidermidis 9142, DSM 18857
14528	S. epidermidis DSM 20042, CCM 50, NCTC 9865
14530	S. epidermidis ES1-248, DSM 30556
14531	S. epidermidis ES1-305-8, DSM 30568
14532	S. epidermidis ES2-5a1, DSM 30591
14533	S. epidermidis ES2-W6c1, DSM 30637
14534	S. epidermidis ES2-W8c2, DSM 30647
14535	S. epidermidis W7/6, DSM 30780
14536	S. epidermidis MW14/1, DSM 30804
14537	S. epidermidis E28, DSM 30883
14538	S. epidermidis K2-4, DSM 30905
14539	S. epidermidis K2-5, DSM 30906
14540	S. epidermidis K2-15, DSM 30916
14541	S. epidermidis K2-17, DSM 30918
23292	S. epidermidis an-1PO b), DSM 30934
23293	S. epidermidis an-2PO b), DSM 30936
24584	S. epidermidis RP62a, BM 3577, DSM 28319, ATCC 35984, CECT ...
24585	S. epidermidis EDCC 5130, DSM 28764
24586	S. epidermidis EDCC 5245, DSM 28765
24587	S. epidermidis A6.1, DSM 30971
130692	S. epidermidis A10_1, DSM 31011
135279	S. epidermidis Am MS 205, CIP 103563, ATCC 49134
135501	S. epidermidis 98179, CIP 105810
135901	S. epidermidis CIP 53.124, ATCC 9491, LMG 13655, NCIMB 8558
136498	S. epidermidis M7, CIP 106299
136534	S. epidermidis RP12, CIP 106510, ATCC 35983, CCUG 44858
137001	S. epidermidis 5, CIP 109562
137002	S. epidermidis 444, CIP 109563
139594	S. epidermidis AmMS 242, CIP 103627, ATCC 49461
139775	S. epidermidis C3_5, DSM 103867
141343	S. epidermidis CCUG 1134
141416	S. epidermidis CCUG 1621
141552	S. epidermidis CCUG 2903
141614	S. epidermidis CCUG 3709, NCTC 6513
141645	S. epidermidis CCUG 4317, NCTC 10519
142146	S. epidermidis CCUG 11027
144134	S. epidermidis CCUG 23118
144916	S. epidermidis CCUG 27072
146980	S. epidermidis CCUG 32590
147458	S. epidermidis CCUG 33609
147826	S. epidermidis CCUG 34325
148342	S. epidermidis CCUG 35257
148575	S. epidermidis CCUG 35659
148977	S. epidermidis CCUG 36670
149012	S. epidermidis CCUG 36722
149057	S. epidermidis CCUG 36797
149246	S. epidermidis CCUG 37337
149313	S. epidermidis CCUG 37477
149329	S. epidermidis CCUG 37526
149330	S. epidermidis CCUG 37527
151012	S. epidermidis CCUG 43038
151446	S. epidermidis CCUG 44090
151477	S. epidermidis CCUG 44126
151492	S. epidermidis CCUG 44145
151497	S. epidermidis CCUG 44153
151791	S. epidermidis CCUG 44887
151822	S. epidermidis CCUG 44987
151823	S. epidermidis CCUG 44988
151824	S. epidermidis CCUG 44989
152233	S. epidermidis CCUG 46178
152270	S. epidermidis CCUG 46277 A
153105	S. epidermidis CCUG 48503
153881	S. epidermidis CCUG 51492
154060	S. epidermidis CCUG 52189
154404	S. epidermidis CCUG 53416
154506	S. epidermidis CCUG 53940
154843	S. epidermidis CCUG 55381
154926	S. epidermidis CCUG 55736
154933	S. epidermidis CCUG 55770
155446	S. epidermidis CCUG 57787 A
155489	S. epidermidis CCUG 57876
155555	S. epidermidis CCUG 58138
156144	S. epidermidis CCUG 60536
156297	S. epidermidis CCUG 61091
156333	S. epidermidis CCUG 61199
156369	S. epidermidis CCUG 61325
156546	S. epidermidis CCUG 62645
156547	S. epidermidis CCUG 62646
156759	S. epidermidis CCUG 64928
156760	S. epidermidis CCUG 64929
156812	S. epidermidis CCUG 65538
157873	S. epidermidis 6aTB_T2, DSM 103953
157874	S. epidermidis 6bT_T3, DSM 103954
157875	S. epidermidis 8aTB_T5, DSM 103968
157876	S. epidermidis 8bTC_T9, DSM 103984
157877	S. epidermidis BV212, DSM 108968
159056	S. epidermidis Fh040319_T1, DSM 109734
159057	S. epidermidis Fh040319_T2, DSM 109735
159058	S. epidermidis T_T3, DSM 110314
159059	S. epidermidis TO-T2, DSM 110961
159060	S. epidermidis TO-T3b, DSM 110990
160180	S. epidermidis SK1-1-2, DSM 24889
164575	S. epidermidis JCM 33475
165297	S. epidermidis JCM 5692
165298	S. epidermidis JCM 5693
172696	S. epidermidis O-47, CRBIP19.266
172697	S. epidermidis BM94314, CH845, CRBIP19.267
172698	S. epidermidis BM12026, CRBIP21.16
172699	S. epidermidis BM12925, CRBIP21.23
172700	S. epidermidis CRBIP21.25, IPF 19
172701	S. epidermidis CRBIP21.26, IPF 20
172702	S. epidermidis CRBIP21.27, IPF 118
172703	S. epidermidis CRBIP21.28, IPF 257
172704	S. epidermidis CRBIP21.30, IPF 449
172705	S. epidermidis CRBIP21.31, IPF 542
172706	S. epidermidis BM9887, CRBIP21.6
172707	S. epidermidis BM9377, CRBIP21.70
172708	S. epidermidis BM9400, CRBIP21.71
172709	S. epidermidis BM9419, CRBIP21.72
174644	S. epidermidis b06378, DSM 117681
174645	S. epidermidis v11608, DSM 117682
179133	S. epidermidis IMET 10845, STI10845

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65878	WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)		Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65878	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	96.31

Spore formation

@ref	Spore formation	Confidence
125439		97.452

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65878	feces; pig, 10 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein	Kranzberg (Bavaria)	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence MN537511 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	284
Soil Samples	44
Animal Samples	8287
Plant Samples	18
Total Samples	8633

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1284332v1 assembly for Staphylococcus epidermidis McC-251-APC-2A	contig	GCA_012843325	1282.3888	1282	66.75

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65878	Staphylococcus sp. strain DSM 106280 16S ribosomal RNA gene, partial sequence	MN537511	1443		29387

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1284332v1 assembly for Staphylococcus epidermidis McC-251-APC-2A
NCBI: GCA_012843325

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	65.85	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	96.31	no
125439	motility	BacteriaNetⓘ	no	79.62	no
125439	spore_formation	BacteriaNetⓘ	no	97.45	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Staphylococcus epidermidis McC-251-APC-2A
NCBI: GCA_012843325.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.25	no
125438	anaerobic	anaerobicⓘ	no	98.73	no
125438	aerobic	aerobicⓘ	no	52.92	no
125438	spore-forming	spore-formingⓘ	no	76.25	no
125438	thermophilic	thermophileⓘ	no	97.19	no
125438	flagellated	motile2+ⓘ	no	83.55	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65878	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106280
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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