Staphylococcus epidermidis CCUG 3709 is a bacterium that was isolated from Nose.
genome sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Bacillota |
| Class Bacilli |
| Order Caryophanales |
| Family Staphylococcaceae |
| Genus Staphylococcus |
| Species Staphylococcus epidermidis |
| Full scientific name Staphylococcus epidermidis (Winslow and Winslow 1908) Evans 1916 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Gram stain | Confidence | |
|---|---|---|---|
| 125439 | negative | 93 |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 94.4 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68381 | 40585 ChEBI | alpha-cyclodextrin | - | builds acid from | from API rID32STR |
| 68375 | 22599 ChEBI | arabinose | - | fermentation | from API ID32STA |
| 68381 | 29016 ChEBI | arginine | + | hydrolysis | from API rID32STR |
| 68380 | 29016 ChEBI | arginine | + | hydrolysis | from API rID32A |
| 68375 | 29016 ChEBI | arginine | + | hydrolysis | from API ID32STA |
| 68378 | 29016 ChEBI | arginine | - | hydrolysis | from API STA |
| 68375 | 17057 ChEBI | cellobiose | - | fermentation | from API ID32STA |
| 68381 | 18333 ChEBI | D-arabitol | - | builds acid from | from API rID32STR |
| 68378 | 15824 ChEBI | D-fructose | + | builds acid from | from API STA |
| 68375 | 15824 ChEBI | D-fructose | + | fermentation | from API ID32STA |
| 68378 | 17634 ChEBI | D-glucose | - | builds acid from | from API STA |
| 68375 | 17634 ChEBI | D-glucose | + | fermentation | from API ID32STA |
| 68379 | 17634 ChEBI | D-glucose | + | fermentation | from API Coryne |
| 68381 | 16899 ChEBI | D-mannitol | - | builds acid from | from API rID32STR |
| 68378 | 16899 ChEBI | D-mannitol | - | builds acid from | from API STA |
| 68379 | 16899 ChEBI | D-mannitol | - | fermentation | from API Coryne |
| 68375 | 16899 ChEBI | D-mannitol | - | fermentation | from API ID32STA |
| 68380 | 16024 ChEBI | D-mannose | + | fermentation | from API rID32A |
| 68375 | 16024 ChEBI | D-mannose | - | fermentation | from API ID32STA |
| 68378 | 16024 ChEBI | D-mannose | + | builds acid from | from API STA |
| 68379 | 16988 ChEBI | D-ribose | - | fermentation | from API Coryne |
| 68375 | 16988 ChEBI | D-ribose | - | fermentation | from API ID32STA |
| 68381 | 16988 ChEBI | D-ribose | - | builds acid from | from API rID32STR |
| 68381 | 16443 ChEBI | D-tagatose | - | builds acid from | from API rID32STR |
| 68378 | 65327 ChEBI | D-xylose | - | builds acid from | from API STA |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 68379 | 4853 ChEBI | esculin | - | hydrolysis | from API Coryne |
| 68375 | 4853 ChEBI | esculin | - | hydrolysis | from API ID32STA |
| 68379 | 5291 ChEBI | gelatin | + | hydrolysis | from API Coryne |
| 68381 | 28087 ChEBI | glycogen | - | builds acid from | from API rID32STR |
| 68379 | 28087 ChEBI | glycogen | - | fermentation | from API Coryne |
| 68381 | 606565 ChEBI | hippurate | - | hydrolysis | from API rID32STR |
| 68381 | 30849 ChEBI | L-arabinose | - | builds acid from | from API rID32STR |
| 68380 | 29985 ChEBI | L-glutamate | - | degradation | from API rID32A |
| 68381 | 17716 ChEBI | lactose | - | builds acid from | from API rID32STR |
| 68378 | 17716 ChEBI | lactose | + | builds acid from | from API STA |
| 68379 | 17716 ChEBI | lactose | + | fermentation | from API Coryne |
| 68375 | 17716 ChEBI | lactose | + | fermentation | from API ID32STA |
| 68381 | 17306 ChEBI | maltose | + | builds acid from | from API rID32STR |
| 68378 | 17306 ChEBI | maltose | + | builds acid from | from API STA |
| 68379 | 17306 ChEBI | maltose | + | fermentation | from API Coryne |
| 68375 | 17306 ChEBI | maltose | + | fermentation | from API ID32STA |
| 68381 | 6731 ChEBI | melezitose | - | builds acid from | from API rID32STR |
| 68381 | 28053 ChEBI | melibiose | - | builds acid from | from API rID32STR |
| 68378 | 28053 ChEBI | melibiose | - | builds acid from | from API STA |
| 68378 | 320061 ChEBI | methyl alpha-D-glucopyranoside | + | builds acid from | from API STA |
| 68381 | 320055 ChEBI | methyl beta-D-glucopyranoside | - | builds acid from | from API rID32STR |
| 68375 | 59640 ChEBI | N-acetylglucosamine | - | fermentation | from API ID32STA |
| 68378 | 59640 ChEBI | N-acetylglucosamine | - | builds acid from | from API STA |
| 68378 | 17632 ChEBI | nitrate | - | reduction | from API STA |
| 68379 | 17632 ChEBI | nitrate | + | reduction | from API Coryne |
| 68375 | 17632 ChEBI | nitrate | + | reduction | from API ID32STA |
| 68380 | 17632 ChEBI | nitrate | + | reduction | from API rID32A |
| 68375 | 18257 ChEBI | ornithine | - | degradation | from API ID32STA |
| 68381 | 27941 ChEBI | pullulan | - | builds acid from | from API rID32STR |
| 68381 | 16634 ChEBI | raffinose | - | builds acid from | from API rID32STR |
| 68380 | 16634 ChEBI | raffinose | - | fermentation | from API rID32A |
| 68378 | 16634 ChEBI | raffinose | + | builds acid from | from API STA |
| 68375 | 16634 ChEBI | raffinose | - | fermentation | from API ID32STA |
| 68381 | 30911 ChEBI | sorbitol | - | builds acid from | from API rID32STR |
| 68381 | 17992 ChEBI | sucrose | + | builds acid from | from API rID32STR |
| 68378 | 17992 ChEBI | sucrose | - | builds acid from | from API STA |
| 68379 | 17992 ChEBI | sucrose | + | fermentation | from API Coryne |
| 68375 | 17992 ChEBI | sucrose | + | fermentation | from API ID32STA |
| 68381 | 27082 ChEBI | trehalose | - | builds acid from | from API rID32STR |
| 68378 | 27082 ChEBI | trehalose | + | builds acid from | from API STA |
| 68375 | 27082 ChEBI | trehalose | - | fermentation | from API ID32STA |
| 68380 | 27897 ChEBI | tryptophan | - | energy source | from API rID32A |
| 68375 | 32528 ChEBI | turanose | - | fermentation | from API ID32STA |
| 68381 | 16199 ChEBI | urea | + | hydrolysis | from API rID32STR |
| 68375 | 16199 ChEBI | urea | - | hydrolysis | from API ID32STA |
| 68379 | 16199 ChEBI | urea | + | hydrolysis | from API Coryne |
| 68380 | 16199 ChEBI | urea | + | hydrolysis | from API rID32A |
| 68378 | 16199 ChEBI | urea | + | hydrolysis | from API STA |
| 68378 | 17151 ChEBI | xylitol | - | builds acid from | from API STA |
| @ref | ChEBI | Metabolite | Is sensitive | Sensitivity conc. | Is resistant | |
|---|---|---|---|---|---|---|
| 68378 | lysostaphin | from API STA | ||||
| 68375 | 28368 | novobiocin | 1.8 µg | from API ID32STA |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68380 | alanine arylamidase | - | 3.4.11.2 | from API rID32A |
| 68381 | Alanyl-Phenylalanyl-Proline arylamidase | - | from API rID32STR | |
| 68381 | alkaline phosphatase | + | 3.1.3.1 | from API rID32STR |
| 68380 | alkaline phosphatase | + | 3.1.3.1 | from API rID32A |
| 68378 | alkaline phosphatase | + | 3.1.3.1 | from API STA |
| 68375 | alkaline phosphatase | + | 3.1.3.1 | from API ID32STA |
| 68379 | alkaline phosphatase | + | 3.1.3.1 | from API Coryne |
| 68380 | alpha-arabinosidase | - | 3.2.1.55 | from API rID32A |
| 68380 | alpha-fucosidase | - | 3.2.1.51 | from API rID32A |
| 68381 | alpha-galactosidase | - | 3.2.1.22 | from API rID32STR |
| 68380 | alpha-galactosidase | - | 3.2.1.22 | from API rID32A |
| 68380 | alpha-glucosidase | + | 3.2.1.20 | from API rID32A |
| 68379 | alpha-glucosidase | - | 3.2.1.20 | from API Coryne |
| 68381 | arginine dihydrolase | + | 3.5.3.6 | from API rID32STR |
| 68380 | arginine dihydrolase | + | 3.5.3.6 | from API rID32A |
| 68378 | arginine dihydrolase | - | 3.5.3.6 | from API STA |
| 68375 | arginine dihydrolase | + | 3.5.3.6 | from API ID32STA |
| 68381 | beta-galactosidase | - | 3.2.1.23 | from API rID32STR |
| 68375 | beta-galactosidase | - | 3.2.1.23 | from API ID32STA |
| 68380 | beta-galactosidase | + | 3.2.1.23 | from API rID32A |
| 68379 | beta-galactosidase | - | 3.2.1.23 | from API Coryne |
| 68380 | beta-Galactosidase 6-phosphate | + | from API rID32A | |
| 68381 | beta-glucosidase | - | 3.2.1.21 | from API rID32STR |
| 68375 | beta-glucosidase | - | 3.2.1.21 | from API ID32STA |
| 68379 | beta-glucosidase | - | 3.2.1.21 | from API Coryne |
| 68380 | beta-glucosidase | - | 3.2.1.21 | from API rID32A |
| 68381 | beta-glucuronidase | - | 3.2.1.31 | from API rID32STR |
| 68380 | beta-glucuronidase | - | 3.2.1.31 | from API rID32A |
| 68375 | beta-glucuronidase | - | 3.2.1.31 | from API ID32STA |
| 68379 | beta-glucuronidase | - | 3.2.1.31 | from API Coryne |
| 68381 | beta-mannosidase | - | 3.2.1.25 | from API rID32STR |
| 68379 | catalase | + | 1.11.1.6 | from API Coryne |
| 68379 | gelatinase | + | from API Coryne | |
| 68380 | glutamate decarboxylase | - | 4.1.1.15 | from API rID32A |
| 68380 | glutamyl-glutamate arylamidase | - | from API rID32A | |
| 68380 | glycin arylamidase | - | from API rID32A | |
| 68381 | glycyl tryptophan arylamidase | - | from API rID32STR | |
| 68380 | histidine arylamidase | - | from API rID32A | |
| 68380 | L-arginine arylamidase | - | from API rID32A | |
| 68375 | L-arginine arylamidase | - | from API ID32STA | |
| 68380 | leucine arylamidase | - | 3.4.11.1 | from API rID32A |
| 68380 | leucyl glycin arylamidase | - | 3.4.11.1 | from API rID32A |
| 68381 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API rID32STR |
| 68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API rID32A |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API Coryne |
| 68375 | ornithine decarboxylase | - | 4.1.1.17 | from API ID32STA |
| 68380 | phenylalanine arylamidase | - | from API rID32A | |
| 68380 | proline-arylamidase | - | 3.4.11.5 | from API rID32A |
| 68379 | pyrazinamidase | + | 3.5.1.B15 | from API Coryne |
| 68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API rID32A |
| 68381 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API rID32STR |
| 68375 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API ID32STA |
| 68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API Coryne |
| 68380 | serine arylamidase | - | from API rID32A | |
| 68380 | tryptophan deaminase | - | 4.1.99.1 | from API rID32A |
| 68380 | tyrosine arylamidase | - | from API rID32A | |
| 68381 | urease | + | 3.5.1.5 | from API rID32STR |
| 68380 | urease | + | 3.5.1.5 | from API rID32A |
| 68378 | urease | + | 3.5.1.5 | from API STA |
| 68375 | urease | - | 3.5.1.5 | from API ID32STA |
| 68379 | urease | + | 3.5.1.5 | from API Coryne |
| Metadata FA analysis | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | |||||||||||||||||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | |||||||||||||||||||||||||||||||||||||||||||||||||||
| @ref | 44679 | |||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| @ref | ADH (Arg) | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | Acid from alpha-cyclodextrinCDEX | Acetoin production (Voges Proskauer test)VP | Alanyl-Phenylalanyl-Proline arylamidaseAPPA | beta GAL | Pyrrolidonyl arylamidasePyrA | N-Acetyl-glucosaminidasebeta NAG | Glycyl-tryptophan arylamidaseGTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Acidification of methyl beta-D-glucopyranosideMbeta DG | TAG | beta MAN | URE | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44679 | + | - | - | - | - | + | - | - | - | - | - | - | + | - | - | - | + | - | - | - | - | - | - | - | - | + | - | - | - | - | - | + |
| 44679 | Sample typeNose |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | 41236_F01 assembly for Staphylococcus epidermidis NCTC6513 | contig | 1282 | 77.8 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | microaerophile | 85.60 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 93.00 | no |
| 125439 | motility | BacteriaNetⓘ | no | 57.40 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 94.40 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 86.59 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 98.09 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 76.00 | no |
| 125438 | aerobic | aerobicⓘ | yes | 50.59 | no |
| 125438 | thermophilic | thermophileⓘ | no | 97.19 | no |
| 125438 | flagellated | motile2+ⓘ | no | 83.05 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Metabolism | Staphylococcal proteases aid in evasion of the human complement system. | Jusko M, Potempa J, Kantyka T, Bielecka E, Miller HK, Kalinska M, Dubin G, Garred P, Shaw LN, Blom AM. | J Innate Immun | 10.1159/000351458 | 2014 | |
| Metabolism | Ability of oral bacteria to degrade fibronectin. | Wikstrom M, Linde A. | Infect Immun | 10.1128/iai.51.2.707-711.1986 | 1986 | |
| Enzymology | Intravenous infusion bottle plugs as a source of microbial contamination. | Holmes CJ, Allwood MC. | J Hyg (Lond) | 10.1017/s0022172400055662 | 1976 | |
| Metabolism | Characterization of the chemical and antimicrobial properties of piscicolin 126, a bacteriocin produced by Carnobacterium piscicola JG126. | Jack RW, Wan J, Gordon J, Harmark K, Davidson BE, Hillier AJ, Wettenhall RE, Hickey MW, Coventry MJ. | Appl Environ Microbiol | 10.1128/aem.62.8.2897-2903.1996 | 1996 | |
| Metabolism | In-vitro characteristics of glycopeptide resistant strains of Staphylococcus epidermidis isolated from patients on CAPD. | Sanyal D, Johnson AP, George RC, Edwards R, Greenwood D | J Antimicrob Chemother | 10.1093/jac/32.2.267 | 1993 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #44679 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 3709 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68375 | Automatically annotated from API ID32STA . |
| #68378 | Automatically annotated from API STA . |
| #68379 | Automatically annotated from API Coryne . |
| #68380 | Automatically annotated from API rID32A . |
| #68381 | Automatically annotated from API rID32STR . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
You found an error in BacDive? Please tell us about it!
Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.
Successfully sent
If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive141614.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data