Staphylococcus epidermidis | Type strain | DSM 20044, ATCC 14990, CCM 2124, WDCM 00132

Strain identifier

BacDive ID: 14529

Type strain:

Species: Staphylococcus epidermidis

Culture col. no.: DSM 20044, ATCC 14990, CCM 2124, WDCM 00132

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	31-03-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Firmicutes
	Class	Bacilli
	Order	Bacillales
	Family	Staphylococcaceae
	Genus	Staphylococcus
	Species	Staphylococcus epidermidis
	Full Scientific Name (PNU)	Staphylococcus epidermidis (Winslow and Winslow 1908) Evans 1916 (Approved Lists 1980)

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #8450]	Type of hemolysis	gamma
[Ref.: #8450]	Incubation period	1-2 days

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #8450]		catalase	+	1.11.1.6
[Ref.: #8450]		cytochrome-c oxidase	-	1.9.3.1

API® ID32STA:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	Ornithine decarboxylaseODC	Esculin hydrolysisESC	Fermentation of D-glucoseGLU	Fermentation of D-fructoseFRU	Fermentation of D-mannoseMNE	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of trehaloseTRE	Fermentation of D-mannitolMAN	Fermentation of raffinoseRAF	Fermentation of D-riboseRIB	Fermentation of cellobioseCEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta-Galactosidasebeta GAL	L-arginine arylamidaseArgA	Alkaline phosphatasePAL	Pyrrolidonyl arylamidasePyrA	Novobiocin resistanceNOVO	Fermentation of sucroseSAC	Fermentation of N-acetyl-glucosamineNAG	Fermentation of turanoseTUR	Fermentation of arabinoseARA	beta-Glucuronidasebeta GUR
[Ref.: #8450]	2912	+	+	-	-	+	+	+	+	+	-	-	-	-	-	+	+	-	-	-	-	-	+	-	+/-	-	-
[Ref.: #8450]	2940	+	+	-	-	+	+	-	+	+	-	-	-	-	-	+	+	-	-	+	-	-	+	-	+	-	-
[Ref.: #8450]	2680	+	+	-	-	+	+	+	+	+	-	-	-	-	-	+	+	-	-	+	-	+	+	-	+	-	-
[Ref.: #8450]	2679	+	+	-	-	+	+	+	+	+	-	-	-	-	-	+	+	-	-	+	-	+/-	+	-	-	-	-
[Ref.: #8450]	2678	+	+	-	-	+	+	+	+	+	-	-	-	-	-	+	+	-	-	+	-	-	+	-	+	-	-
[Ref.: #8450]	2677	+	+	-	-	+	+	+	+	+	-	-	-	-	+	+	-	-	-	+/-	-	+	+	-	+	-	-
[Ref.: #8450]	2676	+	+	-	-	+	+	+	+	+	-	-	-	-	-	+	+	-	-	+	-	+/-	+	-	-	-	-
[Ref.: #8450]	2675	+	+	+/-	-	+	+	-	+	+	-	-	-	-	-	+	+	-	-	+	-	-	+	-	+/-	-	-
[Ref.: #8450]	2674	+	+	-	-	+	+	+	+	+	-	-	-	-	-	not determinedn.d.	+	-	-	+	-	+	+	+	+	-	-

API® STA:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from maltoseMAL	Acid from lactoseLAC	Acid from trehaloseTRE	Acid from D-mannitolMAN	Acid from xylitolXLT	Acid from melibioseMEL	Reduction of nitrateNIT	Alkaline phosphatasePAL	Acetoin production (Voges Proskauer test)VP	Acid from raffinoseRAF	Acid from D-xyloseXYL	Acid from sucroseSAC	Acid from methyl-alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Arginine dihydrolaseADH	Urease/urea hydrolysisURE	Resistance to lysostaphin (EC 3.4.24.75)LSTR
[Ref.: #8450]	224	-	+	+	+	+	+	-	-	-	-	+	+	+	-	-	+	-	+/-	+	+	not determinedn.d.

Note that the displayed test results represent raw data and therefore may deviate!

Antibiotic susceptibility testing

Test 1

Test 2

Test 3

Test 4

Test 5

Test 6

Test 7

Test 8

Reference

[Ref.: #8450]
Mueller-Hinton Agar
37

aerob
yes
Inhibition zone diameter in mm
30
38
32
34-36
30
40
38
36
resistant0
>50
10-12
34
32
30
22
38
38-40
32
36
8
20
30-32
16-18
14
30
30
20
32
40
50
38
40
resistant0
32
18
36

[Ref.: #8450]
Mueller-Hinton Agar



yes
Inhibition zone diameter in mm
30
38
30-32
34
28-30
38-40
36-38
34
resistant0
>50
12
32
28-30
30
22
34
34
30-32
34
10
18
32
16
12
30
28
18-20
32
40
46-48
36
36
resistant0
32
18
34

[Ref.: #8450]
Mueller-Hinton Agar
37
1
aerob
yes
Inhibition zone diameter in mm
24
36
28
30
26-28
36
32
34
resistant0
>50
10
32
28-30
26-28
20
32-34
32-34
30
32-34
resistant0
16-18
30
16-18
10
26
24
20
32-34
38
>50
34
34-36
resistant0
32
18
34

[Ref.: #8450]
Mueller-Hinton Agar



yes
Inhibition zone diameter in mm
30
40
32
38
30-32
42
38-40
36
resistant0
>50
12-14
38-40
32
30-32
24
38-40
36
34
36
10
20-22
32-34
20-22
14
46
28
20
32-34
42
48-50
38
38-40
resistant0
36-38
20-22
36-38

[Ref.: #8450]
Mueller-Hinton Agar
37
1
aerob
yes
Inhibition zone diameter in mm
32
42
32-34
40
34
46
40-42
40-42
resistant0
>50
10-12
30
32
32
32
34
34-36
34
40
18-20
20
32
16
14-16
32
30
18
36
38
50
38
38-40
resistant0
34-36
22
40

[Ref.: #8450]
Mueller-Hinton Agar
37


yes
Inhibition zone diameter in mm
14
28
12
14-16
18
28
24
28
resistant0
40
6
16
20-22
16-18
14-16
22
16-18
24-26
28
resistant0
10-12
18
10-12
8-10
20
18-20
12
n.d.
n.d.
n.d.
n.d.
n.d.
n.d.
n.d.
n.d.
n.d.

[Ref.: #8450]
Mueller-Hinton Agar
37


yes
Inhibition zone diameter in mm
26
38
26-28
32
26-28
40
34
34-36
resistant0
>50
12
34
30
30
20
36-38
36
32
32
10
18-20
28-30
16-18
12-14
30
26
20
n.d.
n.d.
n.d.
n.d.
n.d.
n.d.
n.d.
n.d.
n.d.

[Ref.: #8450]
M 92
37

aerob
yes
Inhibition zone diameter in mm
32
38
32
38
32
40
40
36
resistant0
>50
12
38
32
30
22
38-40
38-40
32
34-36
8
20
32
20
12
32
28
20
32
42
50
38
40-42
resistant0
34
20
38

Only first 15 entries are displayed. Click here to see all.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #22946]	fructose ChEBI	+	growth
[Ref.: #22946]	maltose ChEBI	+	growth
[Ref.: #22946]	mannose ChEBI	+/-	growth
[Ref.: #22946]	ribose ChEBI	+	growth
[Ref.: #22946]	sucrose ChEBI	+	growth
[Ref.: #22946]	trehalose ChEBI	-	growth
[Ref.: #22946]	turanose ChEBI	+/-	growth

[Ref.: #8450]	Murein short key	A11.03
[Ref.: #8450]	Murein types	A3alpha L-Lys-Gly₂_-₄-L-Ser₁_-₂-Gly

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #8450]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #8450]

Culture medium growth

[Ref.: #8450]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #8450]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #8450]

Culture medium growth

[Ref.: #8450]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #41796]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41796]

Culture medium growth

[Ref.: #41796]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8450]			growth	37 ̊C
[Ref.: #41796]			growth	37 ̊C

[Ref.: #8450]	Temperature range	mesophilic
[Ref.: #41796]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #8450]

Sample type/isolated from

nose

Isolation sources categories

#Host Body-Site

#Organ

#Nose

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #8450]	Pathogenicity (human)	yes
[Ref.: #8450]	Pathogenicity (animal)	yes
[Ref.: #8450]	Biosafety level	2	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #8450]

GC-content

34.6 mol%

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #8450]	INSDC	Staphylococcus epidermidis partial 16S rRNA gene, type strain DSM 20044T	LN681574 ENA	16S	1503	1282 tax ID
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Staphylococcus epidermidis gene, partial cds	AB015166 ENA		156	1282 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Staphylococcus epidermidis gseA gene for glutamyl endopeptidase, complete cds	AB096695 ENA		1214	1282 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Staphylococcus epidermidis agr system including response regulator (agrA), histidine kinase (agrC), AgrD (agrD), AgrB (agrB) and delta toxin (hld) genes, complete cds	AF012132 ENA		4900	1282 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Staphylococcus epidermidis putative L-lactate permease LctP (lctP) gene, partial cds	AF162862 ENA		309	1282 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Staphylococcus epidermidis Pal1 (pal1) gene, partial cds; TagF (tagF) gene, complete cds; and TpgX (tpgX) gene, partial cds	AF162863 ENA		3263	1282 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Staphylococcus epidermidis elongation factor Tu (tuf) gene, partial cds	AF274740 ENA		818	1282 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Staphylococcus epidermidis translation elongation factor Tu (tuf) gene, partial cds	AF298800 ENA		812	1282 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Staphylococcus epidermidis strain DSM20044 tmRNA gene, partial sequence	AF375586 ENA		311	1282 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Staphylococcus epidermidis partial sodA gene for superoxide dismutase, strain CIP 81.55 T	AJ343906 ENA		429	1282 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Sequence 370 from Patent WO0123604	AX109637 ENA		787	1282 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Sequence 611 from Patent WO0123604	AX109878 ENA		818	1282 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Sequence 2227 from Patent WO0123604	AX111494 ENA		118	1282 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Sequence 2248 from Patent WO0123604	AX111515 ENA		218	1282 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Sequence 2268 from Patent WO0123604	AX111535 ENA		273	1282 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Sequence 66 from Patent WO0188186	AX354255 ENA		429	1282 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Staphylococcus epidermidis strain DSM 20044 16S ribosomal RNA gene, partial sequence	AY688053 ENA	16S	464	1282 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Staphylococcus epidermidis glyceraldehyde-3-phosphate dehydrogenase (gap) gene, partial cds	DQ321683 ENA		934	1282 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Staphylococcus epidermidis strain ATCC 14990 60 kDa heat shock protein (hsp60) gene, partial cds	EF173658 ENA		555	1282 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Staphylococcus epidermidis RNA polymerase B-subunit (rpoB) gene, partial cds	EF173659 ENA		687	1282 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Staphylococcus epidermidis strain DSM20044 catalase (katA) gene, partial cds	EU259821 ENA		891	1282 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Staphylococcus epidermidis partial recA gene, type strain ATCC 14990T	FN554705 ENA		280	1282 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Staphylococcus epidermidis strain CCM 2124 elongation factor Tu (tuf) gene, partial cds	HM352922 ENA		612	1282 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Staphylococcus epidermidis strain DSM 20044 RNA polymerase B-subunit (rpoB) gene, partial cds	JN190403 ENA		585	1282 tax ID	*
[Ref.: #20218]	INSDC Sequence	S.epidermidis 5S rRNA	K02688 ENA		115	1282 tax ID	*
[Ref.: #20218]	INSDC Sequence	Staphylococcus epidermidis 16S ribosomal RNA (16S rRNA) gene	L37605 ENA	16S	1468	1282 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Staphylococcus epidermidis ATCC 14990 16S rRNA gene, partial sequence	U02913 ENA	16S	397	1282 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Staphylococcus epidermidis 23S rRNA gene, strain DSM 20044 T	Y15751 ENA		907	1282 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	S.epidermidis gene for 16S ribosomal RNA	Z26894 ENA	16S	771	1282 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	S.epidermidis thyF and dfrC genes	Z48233 ENA		1308	1282 tax ID	*
[Ref.: #8450]	16S rRNA gene, Marker Gene (DDBJ Direct submission)	Staphylococcus epidermidis gene for 16S rRNA, partial sequence, strain: ATCC 14990	D83363 ENA	16S	1475	1282 tax ID

Availability in culture collectionsStrain availability

[Ref.: #8450]

Culture collection no.

DSM 20044, ATCC 14990, CCM 2124, WDCM 00132

[Ref.: #8450]

Strain history

<- CCM <- ATCC <- AMIF strain Fussel <- R.H. Deibel

[Ref.: #20218]

Associated Passport(s) in StrainInfo

21835, 21833, 21834, 866253

References

#8450

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20044

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#22946

L. A. DEVRIESE, B. POUTREL, R. KILPPER-BÄLZ, K. H. SCHLEIFER: Staphylococcus gallinarum and Staphylococcus caprae, Two New Species from Animals. IJSEM 33: 480 - 486 1983 ( DOI 10.1099/00207713-33-3-480 )

#41796 ; Curators of the CIP;
* These References are textmined

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