Klebsiella pneumoniae Kp-Goe-827024 is a mesophilic human pathogen that has multiple antibiotic resistances and was isolated from clinical material, abdominal drainage.
antibiotic resistance mesophilic human pathogen genome sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Klebsiella |
| Species Klebsiella pneumoniae |
| Full scientific name Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 64506 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 64506 | NUTRIENT AGAR (DSMZ Medium 1) | Medium recipe at MediaDive | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 64506 | positive | growth | 30 | mesophilic |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | aerobe | 93.9 |
| Test 1 | |
|---|---|
| @ref | 64506 |
| Medium | Mueller-Hinton Agar |
| Incubation temperature | 30 |
| Oxygen condition | aerob |
| Manual_annotation | 1 |
| Inhibition zone diameter in mm | |
| Penicillin G | 0 |
| Oxacillin | 0 |
| Ampicillin | 0 |
| Ticarcillin | 0 |
| Mezlocillin | 0 |
| Cefalotin | 0 |
| Cefazolin | 0 |
| Cefotaxime | 0 |
| Aztreonam | 0 |
| Imipenem | 16 |
| Tetracycline | 0 |
| Chloramphenicol | 0 |
| Gentamycin | 22 |
| Amikacin | 18 |
| Vancomycin | 0 |
| Erythromycin | 12 |
| Lincomycin | 0 |
| Ofloxacin | 8 |
| Norfloxacin | 0 |
| Colistin | 14 |
| Pipemidic acid | 0 |
| Nitrofurantoin | 0 |
| Bacitracin | 0 |
| Polymyxin b | 16 |
| Kanamycin | 10 |
| Neomycin | 18 |
| Doxycycline | 12 |
| Ceftriaxone | 0 |
| Clindamycin | 0 |
| Fosfomycin | 18 |
| Moxifloxacin | 6 |
| Linezolid | 0 |
| Nystatin | 0 |
| Quinupristin/dalfopristin | 0 |
| Teicoplanin | 0 |
| Piperacillin/tazobactam | 0 |
| Test 1 | |
|---|---|
| @ref | 64506 |
| Medium | Müller-Hinton Agar |
| Incubation temperature | 37 |
| Oxygen condition | aerob |
| Manual_annotation | 1 |
| Inhibition zone diameter in mm | |
| Ampicillin | 0 |
| Oxacillin | 0 |
| Penicillin G | 0 |
| Aztreonam | 0 |
| Ticarcillin | 0 |
| Cefotaxime | 0 |
| Ceftazidime | 0 |
| Ceftriaxone | 0 |
| Cefiderocol | 28 |
| Piperacillin/Tazobactam | 6 |
| Imipenem | 12 |
| Meropenem | 6 |
| Ciprofloxacin | 0 |
| Levofloxacin | 6 |
| Moxifloxacin | 0 |
| Ofloxacin | 0 |
| Amikacin | 12 |
| Gentamicin | 20 |
| Tetracycline | 0 |
| Tigecycline | 22 |
| Teicoplanin | 0 |
| Vancomycin | 0 |
| Polymyxin B | 18 |
| Colistin sulphate | 14 |
| Clindamycin | 0 |
| Erythromycin | 8 |
| Fosfomycin | 20 |
| Kanamycin | 0 |
| Chloramphenicol | 0 |
| Linezolid | 0 |
| Nitrofurantoin | 0 |
| Quinupristin/Dalfopristin | 0 |
| Rifampicin | 6 |
| Trimethoprim-sulfamethoxazole (1:19) | 0 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68368 | 27613 ChEBI | amygdalin | + | fermentation | from API 20E |
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68368 | 16899 ChEBI | D-mannitol | + | fermentation | from API 20E |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 68368 | 30849 ChEBI | L-arabinose | + | fermentation | from API 20E |
| 68368 | 62345 ChEBI | L-rhamnose | + | fermentation | from API 20E |
| 68368 | 28053 ChEBI | melibiose | + | fermentation | from API 20E |
| 68368 | 17268 ChEBI | myo-inositol | + | fermentation | from API 20E |
| 68368 | 17632 ChEBI | nitrate | - | reduction | from API 20E |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 68368 | 30911 ChEBI | sorbitol | + | fermentation | from API 20E |
| 68368 | 17992 ChEBI | sucrose | + | fermentation | from API 20E |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| @ref | ONPG | ADH (Arg) | LDC (Lys) | ODC | CIT | H2S productionH2S | URE | TDA (Trp) | IND | Acetoin production (Voges Proskauer test)VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | Nitrite productionNO2 | Reduction to N2N2 | MotilityMOB | Growth on MacConkey mediumMAC | OF-O | OF-F | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64506 | - | - | + | - | + | - | - | - | - | + | - | not determinedn.d. | + | + | + | + | + | + | + | + | - | - | + | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | |
| 64506 | + | - | - | - | + | - | - | - | - | + | - | + | + | + | + | + | + | + | + | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host Body-Site | #Other | #Abdomen | |
| #Host Body Product | #Fluids | - | |
| #Infection | #Patient | - |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|---|
| 64506 | clinical material, abdominal drainage | Göttingen | Germany | DEU | Europe |
| @ref | Pathogenicity human | Pathogenicity animal | Biosafety level | Biosafety level comment | |
|---|---|---|---|---|---|
| 64506 | 2 | Risk group (German classification) |
| @ref | Description | Assembly level | INSDC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | ASM190862v1 assembly for Klebsiella pneumoniae Kp_Goe_827024 | complete | 573 | 97.16 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 90.80 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 75.40 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 98.90 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 93.90 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 100.00 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 96.36 | no |
| 125438 | aerobic | aerobicⓘ | no | 58.10 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 90.45 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.50 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 76.60 | no |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #64506 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103704 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68368 | Automatically annotated from API 20E . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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