Klebsiella pneumoniae (CIP 52.146, NCTC 5056, C 5046)

Name: Klebsiella pneumoniae (CIP 52.146, NCTC 5056, C 5046)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 137160

Type strain

Strain Designation C 5046

Culture col. no. CIP 52.146 NCTC 5056 C 5046

NCBI tax ID(s) 573

Special Collections CIP

History CIP <- 1952, NCTC <- 1937, E.P. Snijders, Amsterdam, The Netherlands: strain C 5046

Links

Klebsiella pneumoniae C 5046 is a facultative anaerobe, Gram-negative, rod-shaped bacterium that was isolated from Pneumonia.

Gram-negative rod-shaped facultative anaerobe genome sequence Bacteria

Name and taxonomic classification

SI-ID 7931

LMG 14236,NCTC 5056,CIP 52.146,CGMCC 1.1736

@ref 20215

Last LPSN update 2026-05-29 08:38:58

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Klebsiella

Species Klebsiella pneumoniae

Full scientific name Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887 (Approved Lists 1980)

Synonyms (1)

"Hyalococcus pneumoniae"

BacDive ID	Other strains from **Klebsiella pneumoniae** (330)	Type strain
4946	K. pneumoniae A, DSM 1620
4947	K. pneumoniae DSM 1643, BMTU 5
4948	K. pneumoniae 240, DSM 2026, ATCC 15380, NCIB 418, NCTC ...
4949	K. pneumoniae H 273, DSM 4270
4950	K. pneumoniae PZH, DSM 4799, ATCC 25955, PZH 572
4951	K. pneumoniae 62-1, DSM 5758, ATCC 25306, DSM 1470
4952	K. pneumoniae WS 1758, DSM 6135
4956	K. pneumoniae GT1, DSM 12082
4957	K. pneumoniae 10-04-09, B02624, DSM 16609
4961	K. pneumoniae DSM 25721, NCCP 13840
4962	K. pneumoniae K6, MCV37, DSM 26371, ATCC 700603, CCUG 45421, ...
4964	K. pneumoniae ASR1, DSM 15998
4968	K. pneumoniae DSM 681, ATCC 10031, NCIB 9111, NCTC 7427, ...
4969	K. pneumoniae CCUG 58866, DSM 789, ATCC 4352, NCIB 10341, ...
23932	K. pneumoniae K. pneumoniae 63, DSM 12059, ICB 6370
131036	K. pneumoniae DSM 24075, WB 2
131729	K. pneumoniae T2-1-1, DSM 102039
131730	K. pneumoniae 102027, T2-1-2, DSM 102040
131731	K. pneumoniae 789, DSM 103517
131732	K. pneumoniae 769, DSM 103518
132747	K. pneumoniae pC1, DSM 15563
132748	K. pneumoniae pC4, DSM 15565
134420	K. pneumoniae CIP 53.22, BR 38
134455	K. pneumoniae KPLA-1, CIP 105705
134462	K. pneumoniae RYC492, CIP 105659, NCTC 50149
134464	K. pneumoniae KPZU-12, CIP 105704
134583	K. pneumoniae 11, CIP 106641
134586	K. pneumoniae 21, CIP 106685
134604	K. pneumoniae MCQ-112, CIP 106982
134621	K. pneumoniae CIP 60.69, NCIMB 10197
134765	K. pneumoniae CIP 60.70, NCIMB 10198
135130	K. pneumoniae Mich. 61, CIP 52.219
135282	K. pneumoniae 1296, CIP 100633, ATCC 27799
135414	K. pneumoniae RP 1, CIP 104118
135415	K. pneumoniae RP 10, CIP 104119
135417	K. pneumoniae RP 24, CIP 104120
135814	K. pneumoniae 625, 5, CIP 80.42
135867	K. pneumoniae CIP 53.23, BR 39
135872	K. pneumoniae CIP 53.25
135918	K. pneumoniae TP 02, CIP 105869
135924	K. pneumoniae 10, M44, CIP 106167
135936	K. pneumoniae ORI-1, CIP 106818
136009	K. pneumoniae 740.84, CIP 101114
136158	K. pneumoniae 4715/50, CIP 52.201
136161	K. pneumoniae B7380, CIP 52.204, ATCC 7380
136163	K. pneumoniae CIP 52.205, NCTC 4140
136165	K. pneumoniae 1015, CIP 52.206
136175	K. pneumoniae SB3245, CIP 52.214
136176	K. pneumoniae 390, CIP 52.215
136179	K. pneumoniae 138, CIP 52.218
136182	K. pneumoniae 2069/49, CIP 52.220
136186	K. pneumoniae 1754/49, CIP 52.222
136187	K. pneumoniae 293/50, CIP 52.223
136188	K. pneumoniae K20, CIP 52.224
136190	K. pneumoniae 1702/49, CIP 52.225
136191	K. pneumoniae 1996/49, CIP 52.226
136193	K. pneumoniae 1680/49, CIP 52.229
136194	K. pneumoniae CIP 52.231, BR 21
136196	K. pneumoniae CIP 52.230, NCTC 9145
136199	K. pneumoniae CIP 52.232, BR 16
136200	K. pneumoniae CIP 52.233, BR 17
136203	K. pneumoniae CIP 52.235, BR 19
136214	K. pneumoniae 97-52, UA 600, CIP 103522
136216	K. pneumoniae CIP 53.17, BR 33
136219	K. pneumoniae CIP 53.8, BR 23
136223	K. pneumoniae CIP 53.11, BR 26
136224	K. pneumoniae CIP 53.12, BR 27
136228	K. pneumoniae CIP 53.15, BR 31
136231	K. pneumoniae AmMS 249, CIP 103623, ATCC 49472
136294	K. pneumoniae 5657, CIP 104298
136451	K. pneumoniae CF 704, CIP 105856
136452	K. pneumoniae CF 2104, CIP 105857
136491	K. pneumoniae M176, 37, CIP 106194
136542	K. pneumoniae 41, CIP 54.128
136546	K. pneumoniae Kp 4940, CIP 106670
136621	K. pneumoniae NHRI 1001, CIP 107112
136939	K. pneumoniae SB 501, 5710/52, CIP 108293
137091	K. pneumoniae 313, CIP 52.216
137155	K. pneumoniae 21, 628, CIP 80.44
137156	K. pneumoniae 629, 24, CIP 80.45
137232	K. pneumoniae 916, CIP 52.208
137234	K. pneumoniae CIP 52.217, BR 13
137241	K. pneumoniae 2812/50, CIP 52.228
137246	K. pneumoniae CIP 53.13, BR 28
137249	K. pneumoniae CIP 53.14, BR 29
137253	K. pneumoniae CIP 53.21, BR 36
137392	K. pneumoniae P20, CIP 104341
137609	K. pneumoniae OM1, 700, CIP 80.46
137610	K. pneumoniae OM26, 6701, CIP 80.47
137611	K. pneumoniae 703, CIP 80.48, QM 56
137700	K. pneumoniae 624, 12, CIP 80.41
138008	K. pneumoniae F1, CIP 52.144, ATCC 13886, NCTC 5054, CCUG ...
138125	K. pneumoniae 87 B-1, CIP 104901
138181	K. pneumoniae MCQ-122, CIP 105166
138362	K. pneumoniae SLK 54, CIP 106769
138364	K. pneumoniae HM08G, CIP 106905
138391	K. pneumoniae 45956, CIP 106976
138440	K. pneumoniae B 5055, CIP 52.145, NCTC 5055
138460	K. pneumoniae 2005/49, CIP 52.221
138507	K. pneumoniae chalazion, CIP A215
138583	K. pneumoniae NB 37, CIP 104039
138657	K. pneumoniae CIP 53.19, BR 34
138771	K. pneumoniae 1056, CIP 52.207
138822	K. pneumoniae LRA 003 09 73, CIP 103687, ATCC 23357
138846	K. pneumoniae Korski, CIP 58.5
139193	K. pneumoniae Innsbruck A-1, CIP 104727
139204	K. pneumoniae 2918381, CIP 104771
139234	K. pneumoniae CIP 53.9, BR 24
139277	K. pneumoniae CF 1304, CIP 105858
139285	K. pneumoniae TP 01, CIP 105868
139321	K. pneumoniae 75, CIP 106231
139425	K. pneumoniae KC100, CIP 110652, KCTC 2242
139426	K. pneumoniae CIP 110798, NCTC 11228, ATCC 29665, CCUG ...
141536	K. pneumoniae CCUG 2715
141748	K. pneumoniae CCUG 6006
141749	K. pneumoniae CCUG 6007
141761	K. pneumoniae CCUG 6507, NCTC 10896
142969	K. pneumoniae CCUG 15954
144300	K. pneumoniae CCUG 24250
144504	K. pneumoniae CCUG 25403
144507	K. pneumoniae CCUG 25408
144508	K. pneumoniae CCUG 25414
144510	K. pneumoniae CCUG 25426
144511	K. pneumoniae CCUG 25431
144525	K. pneumoniae CCUG 25492
144655	K. pneumoniae CCUG 26108
144834	K. pneumoniae CCUG 26733
144835	K. pneumoniae CCUG 26734
144836	K. pneumoniae CCUG 26735
145009	K. pneumoniae CCUG 27395
145416	K. pneumoniae CCUG 28420
145807	K. pneumoniae CCUG 29646
145964	K. pneumoniae CCUG 29970
146278	K. pneumoniae CCUG 30779
146621	K. pneumoniae CCUG 31617, NCTC 7242
147217	K. pneumoniae CCUG 33079
148038	K. pneumoniae CCUG 34718
148195	K. pneumoniae CCUG 35020
148449	K. pneumoniae CCUG 35461
148516	K. pneumoniae CCUG 35581
148980	K. pneumoniae CCUG 36675
149272	K. pneumoniae CCUG 37387
149273	K. pneumoniae CCUG 37388
149365	K. pneumoniae CCUG 37597
150227	K. pneumoniae CCUG 39327
151280	K. pneumoniae CCUG 43603
151760	K. pneumoniae CCUG 44810
151873	K. pneumoniae CCUG 45102
151876	K. pneumoniae CCUG 45105
153240	K. pneumoniae CCUG 48848
153328	K. pneumoniae CCUG 49243
154224	K. pneumoniae CCUG 52804
154229	K. pneumoniae CCUG 52846
154642	K. pneumoniae CCUG 54718
154869	K. pneumoniae CCUG 55505
155043	K. pneumoniae CCUG 56233
155636	K. pneumoniae CCUG 58545
155637	K. pneumoniae CCUG 58546
155638	K. pneumoniae CCUG 58547
155806	K. pneumoniae CCUG 59348
155807	K. pneumoniae CCUG 59349
155808	K. pneumoniae CCUG 59350
155816	K. pneumoniae CCUG 59358
155817	K. pneumoniae CCUG 59359
155818	K. pneumoniae CCUG 59360
155830	K. pneumoniae CCUG 59413
156033	K. pneumoniae CCUG 60138
156059	K. pneumoniae CCUG 60237
156089	K. pneumoniae CCUG 60349
156444	K. pneumoniae CCUG 61815
156658	K. pneumoniae CCUG 63957
156721	K. pneumoniae CCUG 64452
156866	K. pneumoniae CCUG 66189
157025	K. pneumoniae CCUG 68727, NCTC 13442
157026	K. pneumoniae NCTC 13443, CCUG 68728
157926	K. pneumoniae Kp-Goe-33208, Kp_Goe_33208, DSM 103696
157927	K. pneumoniae Kp-Goe-39795, Kp_Goe_39795, DSM 103697
157928	K. pneumoniae Kp-Goe-62629, Kp_Goe_62629, DSM 103698
157929	K. pneumoniae Kp-Goe-71070, Kp_Goe_71070, DSM 103699
157930	K. pneumoniae Kp-Goe-821588, Kp_Goe_821588, DSM 103700
157931	K. pneumoniae Kp-Goe-822579, Kp_Goe_822579, DSM 103701
157932	K. pneumoniae Kp-Goe-822917, Kp_Goe_822917, DSM 103702
157933	K. pneumoniae Kp-Goe-825795, Kp_Goe_825795, DSM 103703
157934	K. pneumoniae Kp-Goe-827024, Kp_Goe_827024, DSM 103704
157935	K. pneumoniae Kp-Goe-827026, Kp_Goe_827026, DSM 103705
157936	K. pneumoniae Kp-Goe-828304, Kp_Goe_828304, DSM 103706
157937	K. pneumoniae Kp-Goe-121641, Kp_Goe_121641, DSM 103707
157938	K. pneumoniae Kp-Goe-149473, Kp_Goe_149473, DSM 103708
157939	K. pneumoniae Kp-Goe-149832, Kp_Goe_149832, DSM 103709
157940	K. pneumoniae Kp-Goe-152021, Kp_Goe_152021, DSM 103710
157941	K. pneumoniae Kp-Goe-154414, Kp_Goe_154414, DSM 103711
159215	K. pneumoniae BWKH 500, DSM 109288
159216	K. pneumoniae BWKH 501, DSM 109289
159217	K. pneumoniae BWKH 502, DSM 109290
159218	K. pneumoniae BWKH 504, DSM 109291
159219	K. pneumoniae BWKH 506, DSM 109292
159220	K. pneumoniae BWKH 507, DSM 109293
159221	K. pneumoniae BWKH 510, DSM 109294
159222	K. pneumoniae BWKH 511, DSM 109295
159223	K. pneumoniae BWKH 514, DSM 109296
159224	K. pneumoniae BWKH 516, DSM 109297
159225	K. pneumoniae BWKH 517, DSM 109298
159226	K. pneumoniae BWKH 518, DSM 109299
159227	K. pneumoniae BWKH 520, DSM 109300
159228	K. pneumoniae BWKH 522, DSM 109301
159229	K. pneumoniae BWKH 523, DSM 109302
159230	K. pneumoniae BWKH 525, DSM 109303
159231	K. pneumoniae BWKH 387, DSM 109306
159232	K. pneumoniae BWKH 388, DSM 109307
159233	K. pneumoniae BWKH 390, DSM 109308
159234	K. pneumoniae BWKH 391, DSM 109309
159235	K. pneumoniae BWKH 393, DSM 109310
159236	K. pneumoniae BWKH 395, DSM 109311
159237	K. pneumoniae BWKH 396, DSM 109312
159238	K. pneumoniae BWKH 397, DSM 109313
159239	K. pneumoniae BWKH 398, DSM 109314
159240	K. pneumoniae BWKH 399, DSM 109315
159241	K. pneumoniae BWKH 401, DSM 109316
159242	K. pneumoniae BWKH 402, DSM 109317
159243	K. pneumoniae BWKH 403, DSM 109318
159244	K. pneumoniae BWKH 404, DSM 109319
159245	K. pneumoniae BWKH 406, DSM 109320
159246	K. pneumoniae BWKH 407, DSM 109321
159247	K. pneumoniae BWKH 410, DSM 109322
159248	K. pneumoniae BWKH 411, DSM 109323
159249	K. pneumoniae BWKH 412, DSM 109324
159250	K. pneumoniae BWKH 413, DSM 109325
159251	K. pneumoniae BWKH 415, DSM 109326
159252	K. pneumoniae BWKH 416, DSM 109327
159253	K. pneumoniae BWKH 421, DSM 109328
159254	K. pneumoniae BWKH 424, DSM 109329
159255	K. pneumoniae BWKH 425, DSM 109330
159256	K. pneumoniae BWKH 428, DSM 109331
159257	K. pneumoniae BWKH 429, DSM 109332
159258	K. pneumoniae BWKH 430, DSM 109333
159259	K. pneumoniae BWKH 485, DSM 109434
159260	K. pneumoniae BWKH 432, DSM 109334
159261	K. pneumoniae BWKH 433, DSM 109335
159262	K. pneumoniae BWKH 434, DSM 109336
159263	K. pneumoniae BWKH 435, DSM 109337
159264	K. pneumoniae BWKH 439, DSM 109338
159265	K. pneumoniae BWKH 440, DSM 109339
159266	K. pneumoniae BWKH 441, DSM 109340
159267	K. pneumoniae BWKH 442, DSM 109341
159268	K. pneumoniae BWKH 443, DSM 109363
159269	K. pneumoniae BWKH 444, DSM 109364
159270	K. pneumoniae BWKH 445, DSM 109365
159271	K. pneumoniae BWKH 446, DSM 109366
159272	K. pneumoniae BWKH 448, DSM 109367
159273	K. pneumoniae BWKH 449, DSM 109368
159274	K. pneumoniae BWKH 450, DSM 109369
159275	K. pneumoniae BWKH 451, DSM 109370
159276	K. pneumoniae BWKH 452, DSM 109371
159277	K. pneumoniae BWKH 453, DSM 109372
159278	K. pneumoniae BWKH 454, DSM 109373
159279	K. pneumoniae BWKH 457, DSM 109383
159280	K. pneumoniae BWKH 458, DSM 109384
159281	K. pneumoniae BWKH 459, DSM 109385
159282	K. pneumoniae BWKH 460, DSM 109386
159283	K. pneumoniae BWKH 461, DSM 109387
159284	K. pneumoniae BWKH 462, DSM 109388
159285	K. pneumoniae BWKH 463, DSM 109389
159286	K. pneumoniae BWKH 466, DSM 109390
159287	K. pneumoniae BWKH 467, DSM 109391
159288	K. pneumoniae BWKH 468, DSM 109392
159289	K. pneumoniae BWKH 469, DSM 109393
159290	K. pneumoniae BWKH 470, DSM 109394
159291	K. pneumoniae BWKH 471, DSM 109395
159292	K. pneumoniae BWKH 473, DSM 109396
159293	K. pneumoniae BWKH 456, DSM 109374
159294	K. pneumoniae BWKH 475, DSM 109397
159295	K. pneumoniae BWKH 476, DSM 109398
159296	K. pneumoniae BWKH 477, DSM 109426
159297	K. pneumoniae BWKH 478, DSM 109427
159298	K. pneumoniae BWKH 479, DSM 109428
159299	K. pneumoniae BWKH 480, DSM 109429
159300	K. pneumoniae BWKH 481, DSM 109430
159301	K. pneumoniae BWKH 482, DSM 109431
159302	K. pneumoniae BWKH 483, DSM 109432
159303	K. pneumoniae BWKH 484, DSM 109433
159304	K. pneumoniae BWKH 490, DSM 109435
159305	K. pneumoniae BWKH 492, DSM 109436
159306	K. pneumoniae BWKH 494, DSM 109437
159307	K. pneumoniae BWKH 496, DSM 109438
159308	K. pneumoniae BWKH 497, DSM 109439
159309	K. pneumoniae BWKH 498, DSM 109440
164070	K. pneumoniae JCM 31465
169368	K. pneumoniae 108453, DSM 108453
169369	K. pneumoniae 235-11, DSM 113479
173492	K. pneumoniae Kp B, CIP 78.23
173493	K. pneumoniae Caroli, CIP 78.24
173494	K. pneumoniae Kn1 Lyon, CIP 78.25
173495	K. pneumoniae KP21, CRBIP19.50
173496	K. pneumoniae SB20, 04A025, CIP 111841
173497	K. pneumoniae SB1139, CIP 111853
173498	K. pneumoniae SB4-2, CIP 111863
173499	K. pneumoniae SB617, CIP 111865, CRBIP28.80
173500	K. pneumoniae SB612, 2-3, CIP 111888
174880	K. pneumoniae 112836, DSM 112836
174881	K. pneumoniae 112838, DSM 112838
174882	K. pneumoniae 112839, DSM 112839
174883	K. pneumoniae 112847, DSM 112847
174884	K. pneumoniae TX 2493, DSM 115737
174885	K. pneumoniae TX 5016, DSM 115751
174886	K. pneumoniae KPC1_111, DSM 116097
174887	K. pneumoniae KPC1_104, DSM 116098
174888	K. pneumoniae KPC1_112, DSM 116099
174889	K. pneumoniae KPC1_113, DSM 116100
174890	K. pneumoniae KPC1_147, DSM 116107
174891	K. pneumoniae KPC1_151, DSM 116108
174892	K. pneumoniae KPC1_181, DSM 116109
174893	K. pneumoniae DSM 116618, NCCP 15864
174894	K. pneumoniae DSM 116619, NCCP 15866
174895	K. pneumoniae DSM 116620, NCCP 16124
174896	K. pneumoniae DSM 116621, NCCP 16212
174897	K. pneumoniae 2742, TX 2742, DSM 117616
174898	K. pneumoniae 3552, TX 3552, DSM 118096
174899	K. pneumoniae 3630, TX 3630, DSM 118098
174900	K. pneumoniae 3911, TX 3911, DSM 118101
174901	K. pneumoniae 4295, DSM 118104
174902	K. pneumoniae 4487, TX 4487, DSM 118265
174903	K. pneumoniae 4662, TX 4662, DSM 118266
174904	K. pneumoniae 5087, DSM 118277
176703	K. pneumoniae KB_Kp057, DSM 117136
176704	K. pneumoniae CN_Kp090, DSM 117137
176705	K. pneumoniae CN_Kp094, DSM 117138
176706	K. pneumoniae CN_Kp107, DSM 117139
176707	K. pneumoniae CN_Kp115, DSM 117140
177902	K. pneumoniae 2011, SF002795
178765	K. pneumoniae Wiedemann IV4-4, ST033705

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
37025	negative	rod-shaped
125439	negative		94.285
125438	negative		100

Culture and growth conditions

Culture medium

@ref	Name	Composition	Medium link
37025	MEDIUM 3 - Columbia agar	Columbia agar (39.000 g);distilled water (1000.000 ml)
37025	CIP Medium 72		Medium recipe at CIP
37025	CIP Medium 3		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
37025	positive	growth	30

Physiology and metabolism

Oxygen tolerance

37025

Oxygen tolerancefacultative anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		97.097

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	+	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	+	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	+	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	+	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	+	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	+	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	+	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
37025	17632 ChEBI	nitrate	+	reduction
37025	16301 ChEBI	nitrite	+	reduction
68371	0 ChEBI	Potassium 2-ketogluconate	+	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	+	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	+	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
37025	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
37025	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
37025	oxidase	-
68382	trypsin	+	3.4.21.4	from API zym
37025	urease	+	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
37025	-	+	+	+	-	+	+	-	+	-	+	+	+	+	-	+	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
37025	not determinedn.d.	+	-	-	+	+	+	-	+	-	+	+	+	+	-	+	+	+	+	+	-	+	+	-	+	+	+	+	+	+	+	+	+	-	-	+	+	-	-	+	-	-	+	-	+	+	-	+	+	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Isolation date
37025	Pneumonia	1937

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
37025	2	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	38977_F01 assembly for Klebsiella pneumoniae NCTC5056	contig	GCA_900451755	573.20137	573	48.23

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: 38977_F01 assembly for Klebsiella pneumoniae NCTC5056
BV-BRC: 573.20137

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	89.81	no
125439	motility	BacteriaNetⓘ	yes	69.45	no
125439	gram_stain	BacteriaNetⓘ	negative	94.29	no
125439	spore_formation	BacteriaNetⓘ	no	97.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Klebsiella pneumoniae strain NCTC5056
PATRIC: 573.20137

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	97.06	yes
125438	spore-forming	spore-formingⓘ	no	89.95	no
125438	aerobic	aerobicⓘ	no	60.16	yes
125438	thermophilic	thermophileⓘ	no	99.50	no
125438	flagellated	motile2+ⓘ	no	77.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	PCR-based identification of Klebsiella pneumoniae subsp. rhinoscleromatis, the agent of rhinoscleroma.	Fevre C, Passet V, Deletoile A, Barbe V, Frangeul L, Almeida AS, Sansonetti P, Tournebize R, Brisse S.	PLoS Negl Trop Dis	10.1371/journal.pntd.0001052	2011
Phylogeny	wzi Gene sequencing, a rapid method for determination of capsular type for Klebsiella strains.	Brisse S, Passet V, Haugaard AB, Babosan A, Kassis-Chikhani N, Struve C, Decre D.	J Clin Microbiol	10.1128/jcm.01924-13	2013
Phylogeny	Molecular serotyping of Klebsiella species isolates by restriction of the amplified capsular antigen gene cluster.	Brisse S, Issenhuth-Jeanjean S, Grimont PA.	J Clin Microbiol	10.1128/jcm.42.8.3388-3398.2004	2004
	Comparative study of antioxidant and antimicrobial activity of berberine-derived Schiff bases, nitro-berberine and amino-berberine.	Alipour Noghabi S, Ghamari Kargar P, Bagherzade G, Beyzaei H.	Heliyon	10.1016/j.heliyon.2023.e22783	2023
Phylogeny	Characterization of the first highly predatory Bdellovibrio bacteriovorus from Iran and its potential lytic activity against principal pathogenic Enterobacteriaceae.	Odooli S, Roghanian R, Emtiazi G, Mohkam M, Ghasemi Y.	Iran J Basic Med Sci	10.22038/ijbms.2020.43159.10146	2020
Genetics	Comparative genomic analysis of Klebsiella pneumonia (LCT-KP214) and a mutant strain (LCT-KP289) obtained after spaceflight.	Guo Y, Li Y, Su L, Chang D, Liu W, Wang T, Yuan Y, Fang X, Wang J, Li T, Fang C, Dai W, Liu C.	BMC Genomics	10.1186/1471-2164-15-589	2014
Enzymology	An allelic variant of the chromosomal gene for class A beta-lactamase K2, specific for Klebsiella pneumoniae, is the ancestor of SHV-1.	Haeggman S, Lofdahl S, Burman LG.	Antimicrob Agents Chemother	10.1128/aac.41.12.2705	1997
	Rapid, cost-effective, sensitive and quantitative detection of Acinetobacter baumannii from pneumonia patients.	Nomanpour B, Ghodousi A, Babaei A, Abtahi H, Tabrizi M, Feizabadi M.	Iran J Microbiol		2011
	Ankylosing spondylitis, HLA-B27 and Klebsiella. I. Cross-reactivity studies with rabbit antisera.	Welsh J, Avakian H, Cowling P, Ebringer A, Wooley P, Panayi G, Ebringer R.	Br J Exp Pathol		1980
Metabolism	Degradation, mineralization and antibiotic inactivation of amoxicillin by UV-A/TiO(2) photocatalysis.	Dimitrakopoulou D, Rethemiotaki I, Frontistis Z, Xekoukoulotakis NP, Venieri D, Mantzavinos D	J Environ Manage	10.1016/j.jenvman.2012.01.010	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#37025	Collection of Institut Pasteur ; Curators of the CIP; CIP 52.146
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Klebsiella pneumoniae (CIP 52.146, NCTC 5056, C 5046)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900451755

Genome-based predictions

Predictions

Literature

Literature

References

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