Name: Klebsiella pneumoniae T2-1-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131729

Type strain:

Species: Klebsiella pneumoniae

Strain Designation: T2-1-1

Culture col. no.: DSM 102039

Strain history: <- X. Y. Chan, Microbiome Laboratory, University of Malaya, Malaysia; T2-1-1 <- C. S. Yang, University of Malaya; T2-1-1

NCBI tax ID(s): 573 (species)

SI-ID 397943

DSM 102039

Other strains from Klebsiella pneumoniae

Section

Klebsiella pneumoniae T2-1-1 is a mesophilic bacterium that was isolated from tongue surface of healthy person.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Klebsiella*
	Species	**Klebsiella pneumoniae**
	Full Scientific Name (LPSN)	Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887 (Approved Lists 1980)

Synonym

"Hyalococcus pneumoniae"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23525]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #23525]

Culture medium growth

[Ref.: #23525]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23525]

Culture medium composition

expand / minimize

[Ref.: #23525]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #23525]

Culture medium growth

[Ref.: #23525]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23525]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23525]			growth	28 °C

[Ref.: #23525]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23525]	Name of produced compound	N acyl homoserine lactones
[Ref.: #23525]	Name of produced compound	N octanoylhomoserine lactone
[Ref.: #23525]	Name of produced compound	N-3 dodecanoyl-L-homoserine lactone

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #23525]	17961	+	-	+	-	+	-	+	-	-	+	-	+	+	+	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #23525]	16874	+	-	+	-	+	-	-	-	-	+	-	+	+	+	+	+	+	+	+	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23525]	Sample type/isolated from	tongue surface of healthy person
[Ref.: #23525]	Country	Malaysia
[Ref.: #23525]	Country ISO 3 Code	MYS
[Ref.: #23525]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host Body-Site

#Oral cavity and airways

#Mouth

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ907955 (>99% sequence identity) for Klebsiella pneumoniae from Microbeatlas

Aquatic Samples	3887
Soil Samples	1141
Animal Samples	41102
Plant Samples	1362
Total Samples	47492

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23525]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23525]	Klebsiella pneumoniae strain T2-1-1 16S ribosomal RNA gene, partial sequence	HQ907955	1532	ENA	573 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Klebsiella pneumoniae T2-1-1	GCA_000710855	contig	GenBank	1449984 tax ID	*
[Ref.: #66792]	Klebsiella pneumoniae T2-1-1	1449984.3	wgs	PATRIC	1449984 tax ID	*
[Ref.: #66792]	Klebsiella pneumoniae T2-1-1	2609460255	draft	JGI IMG/M	1449984 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Klebsiella pneumoniae T2-1-1 PATRIC: 1449984.3
[Ref.: #69480]	motile	no	84.222	no
[Ref.: #69480]	gram-positive	no	97.143	no
[Ref.: #69480]	anaerobic	no	96.032	no
[Ref.: #69480]	halophile	no	89.633	no
[Ref.: #69480]	spore-forming	no	93.224	no
[Ref.: #69480]	thermophile	no	99.597	yes
[Ref.: #69480]	glucose-util	yes	94.635	no
[Ref.: #69480]	aerobic	yes	86.666	no
[Ref.: #69480]	flagellated	no	93.322	no
[Ref.: #69480]	glucose-ferment	yes	90.562	no

Availability in culture collections External links

[Ref.: #23525]

Culture collection no.

DSM 102039

[Ref.: #90120]

SI-ID 397943

Literature:

	Title	Authors	Journal	DOI	Year
	Whole genome analysis of Klebsiella pneumoniae T2-1-1 from human oral cavity.	Chan KG, Yin WF, Chan XY	Genom Data	10.1016/j.gdata.2015.12.008	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23525

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102039

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90120

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397943.1 )

* These data were automatically processed and therefore are not curated

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