Name: Rhodococcus erythropolis CIP 104497
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 137083

Type strain:

Species: Rhodococcus erythropolis

Culture col. no.: CIP 104497, ATCC 15963, IAM 1399, IFO 12538, JCM 2892, NBRC 12538

Strain history: CIP <- 1995, JCM <- IAM <- H. Lizuka and K. Komagata: strain Kp-10, Corynebacterium oleophilus

NCBI tax ID(s): 1833 (species)

SI-ID 45597

ATCC 15963, IAM 1399, NRRL B-16534, CIP 104497, IFO 12538, JCM 2892, NBRC 12538

Special Collections

Other strains from Rhodococcus erythropolis

Section

Rhodococcus erythropolis CIP 104497 is a prokaryote.

16S sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Genus	*Rhodococcus*
	Species	**Rhodococcus erythropolis**
	Full Scientific Name (LPSN)	Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 (Approved Lists 1980)

	Synonym	"Mycobacterium* erythropolis"*
	Synonym	Rhodococcus qingshengii
	Synonym	Rhodococcus baikonurensis
	Synonym	Rhodococcus jialingiae
	Synonym	Rhodococcus enclensis
	Synonym	Rhodococcus degradans

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36934]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #36934]

Culture medium growth

[Ref.: #36934]

Culture medium composition

expand / minimize

[Ref.: #36934]

Culture medium

CIP Medium 3

[Ref.: #36934]

Culture medium growth

[Ref.: #36934]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #36934]			growth	30 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil in petroleum zone
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia

[Ref.: #36934]	Sample type/isolated from	Environment, Soil in petroleum zone
[Ref.: #36934]	Country	Japan
[Ref.: #36934]	Country ISO 3 Code	JPN
[Ref.: #36934]	Continent	Asia

[Ref.: #36934]	Country	Japan
[Ref.: #36934]	Country ISO 3 Code	JPN
[Ref.: #36934]	Continent	Asia
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #36934]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rhodococcus erythropolis IAM 1399 16S ribosomal RNA gene, partial sequence	AY017138	625	GenBank ENA	1833 tax ID
[Ref.: #124043]	Rhodococcus erythropolis gene for 16S rRNA, partial sequence, strain: JCM 2892.	AB429547	1440	GenBank ENA	1833 tax ID	*

[Ref.: #67770]

GC-content

61.2 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #36934]

Culture collection no.

CIP 104497, ATCC 15963, IAM 1399, IFO 12538, JCM 2892, NBRC 12538

[Ref.: #94057]

SI-ID 45597

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Gene cluster and regulation system for 1,1-dichloro-2,2-bis(4-chlorophenyl)ethylene (DDE) degradation in Janibacter sp. TYM3221.	Nguyen PA, Trinh TH, Fukumitsu Y, Shimodaira J, Miyauchi K, Tokuda M, Kasai D, Masai E, Fukuda M	J Biosci Bioeng	10.1016/j.jbiosc.2013.01.007	2013	*
Metabolism	Dual two-component regulatory systems are involved in aromatic compound degradation in a polychlorinated-biphenyl degrader, Rhodococcus jostii RHA1.	Takeda H, Shimodaira J, Yukawa K, Hara N, Kasai D, Miyauchi K, Masai E, Fukuda M	J Bacteriol	10.1128/JB.00429-10	2010	*
Metabolism	Characterization of transcriptional regulatory genes for biphenyl degradation in Rhodococcus sp. strain RHA1.	Takeda H, Yamada A, Miyauchi K, Masai E, Fukuda M	J Bacteriol	10.1128/JB.186.7.2134-2146.2004	2004	*
Metabolism	2-Hydroxypenta-2,4-dienoate metabolic pathway genes in a strong polychlorinated biphenyl degrader, Rhodococcus sp. strain RHA1.	Sakai M, Miyauchi K, Kato N, Masai E, Fukuda M	Appl Environ Microbiol	10.1128/AEM.69.1.427-433.2003	2003	*
Enzymology	Characterization of nitrile hydratase genes cloned by DNA screening from Rhodococcus erythropolis.	Duran R, Nishiyama M, Horinouchi S, Beppu T	Biosci Biotechnol Biochem	10.1271/bbb.57.1323	1993	*
	Multiple Polychlorinated Biphenyl Transformation Systems in the Gram-Positive Bacterium Rhodococcus sp. Strain RHA1.	Seto M, Masai E, Ida M, Hatta T, Kimbara K, Fukuda M, Yano K	Appl Environ Microbiol	10.1128/aem.61.12.4510-4513.1995	1995	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#36934 Collection of Institut Pasteur ; Curators of the CIP; CIP 104497
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#94057

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45597.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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