Rhodococcus erythropolis B-286 is a bacterium of the family Nocardiaceae.
genome sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Mycobacteriales |
| Family Nocardiaceae |
| Genus Rhodococcus |
| Species Rhodococcus erythropolis |
| Full scientific name Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 (Approved Lists 1980) |
| Synonyms (9) |
| @ref | Motility | Confidence | |
|---|---|---|---|
| 125438 | 92.5 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 10937 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | Medium recipe at MediaDive | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 10937 | positive | growth | 28 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM46964v1 assembly for Rhodococcus rhodochrous ATCC 17895 | contig | 1330040 | 0 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 97.93 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 53.77 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 96.25 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 43.42 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 89.51 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 98.00 | no |
| 125438 | spore-forming | spore-formingⓘ | yes | 57.05 | no |
| 125438 | aerobic | aerobicⓘ | yes | 84.21 | no |
| 125438 | thermophilic | thermophileⓘ | no | 97.50 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 92.50 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Enantioselective Michael addition of water. | Chen BS, Resch V, Otten LG, Hanefeld U. | Chemistry | 10.1002/chem.201405579 | 2015 | ||
| Enzymology | Diversity of nitrile hydratase and amidase enzyme genes in Rhodococcus erythropolis recovered from geographically distinct habitats. | Brandao PF, Clapp JP, Bull AT. | Appl Environ Microbiol | 10.1128/aem.69.10.5754-5766.2003 | 2003 | |
| Genetics | Detection of gene clusters for biodegradation of alkanes and aromatic compounds in the Rhodococcus qingshengii VKM Ac-2784D genome. | Markova YA, Petrushin IS, Belovezhets LA. | Vavilovskii Zhurnal Genet Selektsii | 10.18699/vjgb-23-33 | 2023 | |
| Phylogeny | Next-generation systematics: An innovative approach to resolve the structure of complex prokaryotic taxa. | Sangal V, Goodfellow M, Jones AL, Schwalbe EC, Blom J, Hoskisson PA, Sutcliffe IC. | Sci Rep | 10.1038/srep38392 | 2016 | |
| Metabolism | Exploring the abundance of oleate hydratases in the genus Rhodococcus-discovery of novel enzymes with complementary substrate scope. | Busch H, Tonin F, Alvarenga N, van den Broek M, Lu S, Daran JM, Hanefeld U, Hagedoorn PL. | Appl Microbiol Biotechnol | 10.1007/s00253-020-10627-7 | 2020 | |
| Pathogenicity | Relationships between colony morphotypes and oil tolerance in Rhodococcus rhodochrous. | Iwabuchi N, Sunairi M, Anzai H, Nakajima M, Harayama S. | Appl Environ Microbiol | 10.1128/aem.66.11.5073-5077.2000 | 2000 | |
| Use of whole genome sequences to develop a molecular phylogenetic framework for Rhodococcus fascians and the Rhodococcus genus. | Creason AL, Davis EW, Putnam ML, Vandeputte OM, Chang JH. | Front Plant Sci | 10.3389/fpls.2014.00406 | 2014 | ||
| Genetics | Draft genome sequence of Rhodococcus rhodochrous strain ATCC 17895. | Chen BS, Otten LG, Resch V, Muyzer G, Hanefeld U | Stand Genomic Sci | 10.4056/sigs.4418165 | 2013 |
| #10937 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43296 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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https://doi.org/10.13145/bacdive10870.20260601.11
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