Name: Rhodococcus erythropolis No 52
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 10865

Type strain:

Species: Rhodococcus erythropolis

Strain Designation: No 52

Culture col. no.: DSM 43060, ATCC 11048, CCM 2595, NCIB 8147, NCTC 8036, CCUG 12167, JCM 3132, CECT 3008, CGMCC 4.1491, IFO 13914, IMET 7462, NBRC 13914, NCIMB 8147, NRRL B-1574

Strain history: KCC A-0132 <-- Y. Okami <-- ATCC 11048 <-- NCTC 8036 <-- F. W. Moore.

NCBI tax ID(s): 1833 (species)

SI-ID 297046

ATCC 11048, NCTC 8036, CCUG 12167, CCM 2595, NCIB 8147, JCM 3132, NCIMB 8147, NRRL B-1574, IMET7463, IFO 13914, CECT 3008, NBRC 13914, NCIM 2352, CGMCC 4.1491, DSM 43060, DSM 26610

Other strains from Rhodococcus erythropolis

Section

Rhodococcus erythropolis No 52 is a microaerophile, mesophilic human pathogen that was isolated from soil.

human pathogen
mesophilic
microaerophile
16S sequence
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Genus	*Rhodococcus*
	Species	**Rhodococcus erythropolis**
	Full Scientific Name (LPSN)	Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 (Approved Lists 1980)

	Synonym	"Mycobacterium* erythropolis"*
	Synonym	Rhodococcus qingshengii
	Synonym	Rhodococcus baikonurensis
	Synonym	Rhodococcus jialingiae
	Synonym	Rhodococcus enclensis
	Synonym	Rhodococcus degradans

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %94.047

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10724]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #10724]

Culture medium growth

[Ref.: #10724]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10724]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #10724]	growth	28 °C
[Ref.: #45662]	growth	22-37 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #10724]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #45662]

Oxygen tolerance

microaerophile

[Ref.: #69481]	Ability of spore formation	no Confidence in %94
[Ref.: #69480]	Ability of spore formation	no Confidence in %98.805

[Ref.: #67770]

Observation

quinones: MK-8(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	nitrate ChEBI	-	reduction	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	dinitrogen ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E
[Ref.: #68368]	nitrite ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Indole test
[Ref.: #68368]		indole ChEBI	-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #10724]	17805	-	-	-	-	-	-	+/-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #10724]	14031	-	+/-	+/-	+/-	-	+	+	-	-	-	+/-	+/-	-	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10724]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10724]	Pathogenicity (human)	yes, in single cases
[Ref.: #10724]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Rhodococcus erythropolis strain ATCC 11048 16S ribosomal RNA gene, partial sequence	AY281107	967	ENA	1833 tax ID	*
[Ref.: #20218]	Rhodococcus erythropolis partial 16S rRNA gene, strain CCM2595	AJ620506	881	ENA	1833 tax ID	*
[Ref.: #20218]	Rhodococcus erythropolis DSM 43060 16S ribosomal RNA gene, partial sequence	AY017131	625	ENA	1833 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rhodococcus erythropolis NCTC8036	GCA_900455855	contig	GenBank	1833 tax ID
[Ref.: #66792]	Rhodococcus erythropolis CCM2595	GCA_000454045	complete	GenBank	1136179 tax ID	*
[Ref.: #66792]	Rhodococcus erythropolis CCM2595	1136179.20	plasmid	PATRIC	1136179 tax ID	*
[Ref.: #66792]	Rhodococcus erythropolis CCM2595	1136179.4	complete	PATRIC	1136179 tax ID	*
[Ref.: #66792]	Rhodococcus erythropolis strain NCTC8036	1833.119	wgs	PATRIC	1833 tax ID	*
[Ref.: #66792]	Rhodococcus erythropolis NCTC 8036	2903984161	draft	JGI IMG/M	1833 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhodococcus erythropolis CCM2595 CCM2595 NCBI: GCA_000454045.1
[Ref.: #69481]	spore-forming	no	94	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodococcus erythropolis CCM2595 CCM2595 NCBI: GCA_000454045.1
[Ref.: #69480]	motile	no	92.921	no
[Ref.: #69480]	flagellated	no	98.143	no
[Ref.: #69480]	gram-positive	yes	85.095	no
[Ref.: #69480]	anaerobic	no	99.329	yes
[Ref.: #69480]	aerobic	yes	90.88	yes
[Ref.: #69480]	halophile	no	92.611	no
[Ref.: #69480]	spore-forming	no	72.127	no
[Ref.: #69480]	thermophile	no	99.199	yes
[Ref.: #69480]	glucose-util	yes	90.797	no
[Ref.: #69480]	glucose-ferment	no	90.198	yes

Availability in culture collections External links

[Ref.: #10724]

Culture collection no.

DSM 43060, ATCC 11048, CCM 2595, NCIB 8147, NCTC 8036, CCUG 12167, JCM 3132, CECT 3008, CGMCC 4.1491, IFO 13914, IMET 7462, NBRC 13914, NCIMB 8147, NRRL B-1574

[Ref.: #80121]

SI-ID 297046

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Sigma regulatory network in Rhodococcus erythropolis CCM2595.	Stepanek V, Dostalova H, Busche T, Blumenstein J, Grulich M, Plasil L, Rucka L, Nesvera J, Patek M	FEMS Microbiol Lett	10.1093/femsle/fnac014	2022	*
Enzymology	Identification of Rhodococcus erythropolis Promoters Controlled by Alternative Sigma Factors Using In Vivo and In Vitro Systems and Heterologous RNA Polymerase.	Blumenstein J, Radisch R, Stepanek V, Grulich M, Dostalova H, Patek M	Curr Microbiol	10.1007/s00284-021-02747-8	2022	*
Biotechnology	High Regioselectivity Production of 5-Cyanovaleramide from Adiponitrile by a Novel Nitrile Hydratase Derived from Rhodococcus erythropolis CCM2595.	Wang L, Liu S, Du W, Dou T, Liang C	ACS Omega	10.1021/acsomega.0c02188	2020	*
Genetics	Complete Genome Sequence of Rhodococcus erythropolis Phage Shuman.	Ponce Reyes S, Park PJ, Kaluka D, Washington JM	Microbiol Resour Announc	10.1128/MRA.00113-19	2019	*
Metabolism	Induction and carbon catabolite repression of phenol degradation genes in Rhodococcus erythropolis and Rhodococcus jostii.	Szokol J, Rucka L, Simcikova M, Halada P, Nesvera J, Patek M	Appl Microbiol Biotechnol	10.1007/s00253-014-5881-6	2014	*
Metabolism	Expression control of nitrile hydratase and amidase genes in Rhodococcus erythropolis and substrate specificities of the enzymes.	Rucka L, Volkova O, Pavlik A, Kaplan O, Kracik M, Nesvera J, Martinkova L, Patek M	Antonie Van Leeuwenhoek	10.1007/s10482-014-0179-3	2014	*
Genetics	Genome Sequence of Rhodococcus erythropolis Strain CCM2595, a Phenol Derivative-Degrading Bacterium.	Strnad H, Patek M, Fousek J, Szokol J, Ulbrich P, Nesvera J, Paces V, Vlcek C	Genome Announc	10.1128/genomeA.00208-14	2014	*
Metabolism	Structural analysis of mycolic acids from phenol-degrading strain of Rhodococcus erythropolis by liquid chromatography-tandem mass spectrometry.	Kolouchova I, Schreiberova O, Masak J, Sigler K, Rezanka T	Folia Microbiol (Praha)	10.1007/s12223-012-0156-z	2012	*
Phylogeny	RP-HPLC/MS-APCI analysis of odd-chain TAGs from Rhodococcus erythropolis including some regioisomers.	Rezanka T, Schreiberova O, Krulikovska T, Masak J, Sigler K	Chem Phys Lipids	10.1016/j.chemphyslip.2010.01.007	2010	*
Metabolism	Analysis of catRABC operon for catechol degradation from phenol-degrading Rhodococcus erythropolis.	Vesely M, Knoppova M, Nesvera J, Patek M	Appl Microbiol Biotechnol	10.1007/s00253-007-0997-6	2007	*
Enzymology	Host-vector system for phenol-degrading Rhodococcus erythropolis based on Corynebacterium plasmids.	Vesely M, Patek M, Nesvera J, Cejkova A, Masak J, Jirku V	Appl Microbiol Biotechnol	10.1007/s00253-003-1230-x	2003	*
Enzymology	Barbiturase, a novel zinc-containing amidohydrolase involved in oxidative pyrimidine metabolism.	Soong CL, Ogawa J, Sakuradani E, Shimizu S	J Biol Chem	10.1074/jbc.M110784200	2001	*
	Modification of nitrile hydratase from Rhodococcus erythropolis CCM2595 by semirational design to enhance its substrate affinity.	Wang L, Cui B, Qiu K, Huang J, Liang C	Biointerphases	10.1116/6.0002061	2022	*

References

#10724

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43060

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#45662 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 12167

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80121

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297046.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Rhodococcus erythropolis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Rhodococcus erythropolis CCM2595 CCM2595

Rhodococcus erythropolis CCM2595 CCM2595

Change proposal

Change proposal