Rhodococcus erythropolis JCM 9805 is a mesophilic prokaryote that was isolated from Gut homogenate of the wood-feeding termite Reticulitermes speratus.
mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Bacillati |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Mycobacteriales |
| Family Nocardiaceae |
| Genus Rhodococcus |
| Species Rhodococcus erythropolis |
| Full scientific name Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 (Approved Lists 1980) |
| Synonyms (9) |
| @ref | Motility | Confidence | |
|---|---|---|---|
| 125438 | 92.5 |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 67770 | positive | growth | 30 | mesophilic |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | obligate aerobe | 98.1 |
| @ref | Sample type | Host species | |
|---|---|---|---|
| 67770 | Gut homogenate of the wood-feeding termite Reticulitermes speratus | Reticulitermes speratus |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | |
|---|---|---|---|---|---|---|---|
| 67770 | ASM131274v1 assembly for Rhodococcus erythropolis JCM 9805 | contig | 1298616 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 67770 | Rhodococcus erythropolis DNA for 16S rRNA, partial sequence | D87089 | 891 | 1833 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 87.50 | no |
| 125439 | motility | BacteriaNetⓘ | no | 63.00 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 85.40 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 98.10 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 89.39 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 97.62 | no |
| 125438 | spore-forming | spore-formingⓘ | yes | 56.34 | no |
| 125438 | aerobic | aerobicⓘ | yes | 83.36 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.00 | no |
| 125438 | flagellated | motile2+ⓘ | no | 92.50 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Phylogenomic Classification and Biosynthetic Potential of the Fossil Fuel-Biodesulfurizing Rhodococcus Strain IGTS8. | Thompson D, Cognat V, Goodfellow M, Koechler S, Heintz D, Carapito C, Van Dorsselaer A, Mahmoud H, Sangal V, Ismail W. | Front Microbiol | 10.3389/fmicb.2020.01417 | 2020 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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https://doi.org/10.13145/bacdive166076.20251217.10
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BacDive in 2025: the core database for prokaryotic strain data