Name: Rhodococcus erythropolis CIP 104500
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 137088

Type strain:

Species: Rhodococcus erythropolis

Culture col. no.: CIP 104500, ATCC 15962, IAM 1494, JCM 2895

Strain history: IAM 1494 <-- H. Iizuka and K. Komagata P-8-2.

NCBI tax ID(s): 1833 (species)

Other strains from Rhodococcus erythropolis

Section

Rhodococcus erythropolis CIP 104500 is a mesophilic bacterium of the family Nocardiaceae.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Nocardiaceae*
	Genus	*Rhodococcus*
	Species	**Rhodococcus erythropolis**
	Full Scientific Name (PNU)	Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 (Approved Lists 1980)

	Synonym	Rhodococcus qingshengii
	Synonym	Rhodococcus baikonurensis
	Synonym	"Mycobacterium* erythropolis"*
	Synonym	Rhodococcus jialingiae
	Synonym	Rhodococcus enclensis
	Synonym	Rhodococcus degradans

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36939]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #36939]

Culture medium growth

[Ref.: #36939]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #36939]			growth	30 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #36939]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil in petroleum zone
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia

[Ref.: #36939]	Country	Japan
[Ref.: #36939]	Country ISO 3 Code	JPN
[Ref.: #36939]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB429538 (>99% sequence identity) for Nocardiaceae from Microbeatlas

Aquatic Samples	6494
Soil Samples	7777
Animal Samples	11681
Plant Samples	2835
Total Samples	28787

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rhodococcus erythropolis gene for 16S rRNA, partial sequence, strain: JCM 2895	AB429538	1440	ENA	1833 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodococcus erythropolis JCM 2895	GCA_024349805	complete	GenBank	1833 tax ID	*
[Ref.: #66792]	Streptococcus pneumoniae 2245STDY5804435	GCA_900055335	scaffold	PATRIC	1313 tax ID	*

[Ref.: #67770]

GC-content

60.2 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #36939]

Culture collection no.

CIP 104500, ATCC 15962, IAM 1494, JCM 2895

[Ref.: #20218]

Associated Passport(s) in StrainInfo

154560, 99028, 99030, 154561

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Isolation of two plasmids, pRET1100 and pRET1200, from Rhodococcus erythropolis IAM1400 and construction of a Rhodococcus-Escherichia coli shuttle vector.	Yamamura ET	J Biosci Bioeng	10.1016/j.jbiosc.2018.01.001	2018	*
Metabolism	Identification of a novel bacteriocin-like protein and structural gene from Rhodococcus erythropolis JCM 2895, using suppression-subtractive hybridization.	Kitagawa W, Mitsuhashi S, Hata M, Tamura T	J Antibiot (Tokyo)	10.1038/s41429-018-0078-3	2018	*
Genetics	Complete Genome Sequence of Rhodococcus erythropolis JCM 2895, an Antibiotic Protein-Producing Strain.	Kitagawa W, Hata M	Microbiol Resour Announc	10.1128/mra.00682-22	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#36939 Collection of Institut Pasteur ; Curators of the CIP; CIP 104500

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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