Name: Rhodococcus erythropolis CIP 104500
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 137088

Type strain:

Species: Rhodococcus erythropolis

Culture col. no.: CIP 104500, ATCC 15962, IAM 1494, JCM 2895

Strain history: CIP <- 1995, JCM <- IAM <- H. Lizuka and K. Komagata: strain P-8-2, Corynebacterium hydrocarboclastum

NCBI tax ID(s): 1833 (species)

SI-ID 36599

ATCC 15962, IAM 1494, NRRL B-16533, CIP 104500, JCM 2895

Special Collections

Other strains from Rhodococcus erythropolis

Section

Rhodococcus erythropolis CIP 104500 is a prokaryote.

16S sequence
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Genus	*Rhodococcus*
	Species	**Rhodococcus erythropolis**
	Full Scientific Name (LPSN)	Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 (Approved Lists 1980)

	Synonym	"Mycobacterium* erythropolis"*
	Synonym	Rhodococcus qingshengii
	Synonym	Rhodococcus baikonurensis
	Synonym	Rhodococcus jialingiae
	Synonym	Rhodococcus enclensis
	Synonym	Rhodococcus degradans

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %90.995

[Ref.: #69480]	Motility	no Confidence in %92

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36939]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #36939]

Culture medium growth

[Ref.: #36939]

Culture medium composition

expand / minimize

[Ref.: #36939]

Culture medium

CIP Medium 3

[Ref.: #36939]

Culture medium growth

[Ref.: #36939]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #36939]			growth	30 °C
[Ref.: #67770]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil in petroleum zone
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia

[Ref.: #36939]	Sample type/isolated from	Environment, Soil in petroleum zone
[Ref.: #36939]	Country	Japan
[Ref.: #36939]	Country ISO 3 Code	JPN
[Ref.: #36939]	Continent	Asia

[Ref.: #36939]	Country	Japan
[Ref.: #36939]	Country ISO 3 Code	JPN
[Ref.: #36939]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB429538 (>99% sequence identity) for Nocardiaceae from Microbeatlas

Aquatic Samples	6494
Soil Samples	7777
Animal Samples	11681
Plant Samples	2835
Total Samples	28787

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #36939]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rhodococcus erythropolis gene for 16S rRNA, partial sequence, strain: JCM 2895	AB429538	1440	GenBank ENA	1833 tax ID
[Ref.: #124043]	Rhodococcus erythropolis gene for 16S rRNA, partial sequence, strain: JCM 2895.	AB478992	1440	GenBank ENA	1833 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodococcus erythropolis JCM 2895	GCA_024349805	complete	GenBank ENA	1833 tax ID	*

[Ref.: #67770]

GC-content

60.2 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodococcus erythropolis JCM 2895 NCBI: GCA_024349805.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.995	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.982	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	83.835	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	62.587	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92	no

Availability in culture collections External links

[Ref.: #36939]

Culture collection no.

CIP 104500, ATCC 15962, IAM 1494, JCM 2895

[Ref.: #94061]

SI-ID 36599

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Identification of a novel bacteriocin-like protein and structural gene from Rhodococcus erythropolis JCM 2895, using suppression-subtractive hybridization.	Kitagawa W, Mitsuhashi S, Hata M, Tamura T	J Antibiot (Tokyo)	10.1038/s41429-018-0078-3	2018	*
Enzymology	Isolation of two plasmids, pRET1100 and pRET1200, from Rhodococcus erythropolis IAM1400 and construction of a Rhodococcus-Escherichia coli shuttle vector.	Yamamura ET	J Biosci Bioeng	10.1016/j.jbiosc.2018.01.001	2018	*
Genetics	Complete Genome Sequence of Rhodococcus erythropolis JCM 2895, an Antibiotic Protein-Producing Strain.	Kitagawa W, Hata M	Microbiol Resour Announc	10.1128/mra.00682-22	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#36939 Collection of Institut Pasteur ; Curators of the CIP; CIP 104500

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#94061

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36599.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Rhodococcus erythropolis JCM 2895

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