Name: Nocardia calcarea DSM 43188
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 10867

Type strain:

Species: Nocardia calcarea

Culture col. no.: DSM 43188, ATCC 19369, CBS 613.67, CCM 2597, NCIB 8863, JCM 3191, BCRC 13743, IMET 7472, KCTC 9077, MTCC 1548, NBIMCC 1358, NCAIM B.01653, NCIMB 8863

Strain history: KCC A-0191 <-- AJ 9107 <-- NCIB 8863 <-- M. E. Brown.

NCBI tax ID(s): 1833 (species)

SI-ID 311081

ATCC 19369, NCIB 8863, DSM 43188, CCM 2597, JCM 3191, CCRC 13743, IMET 7472, NCIMB 8863, CBS 613.67, KCTC 9077, NCAIM B.01653, BCRC 13743, NBIMCC 1358, IMET 420, NCIM 2086

Special Collections

Section

Nocardia calcarea DSM 43188 is a human pathogen that was isolated from chalky grassland.

human pathogen
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Nocardiaceae*
	Genus	*Nocardia*
	Species	**Nocardia calcarea**
	Full Scientific Name (LPSN)	Nocardia calcarea Metcalfe and Brown 1957 (Approved Lists 1980)

Synonym

Arthrobacter picolinophilus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10855]

Culture medium

BHI-GLUCOSE MEDIUM (DSMZ Medium 82)

[Ref.: #10855]

Culture medium growth

[Ref.: #10855]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10855]

Culture medium composition

expand / minimize

[Ref.: #10855]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #10855]

Culture medium growth

[Ref.: #10855]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10855]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #10855]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10855]	Sample type/isolated from	chalky grassland
[Ref.: #10855]	Country	United Kingdom
[Ref.: #10855]	Country ISO 3 Code	GBR
[Ref.: #10855]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Chalky grassland soil
[Ref.: #67770]	Country	United Kingdom
[Ref.: #67770]	Country ISO 3 Code	GBR
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Grassland

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X80618 (>99% sequence identity) for Nocardiaceae from Microbeatlas

Aquatic Samples	6494
Soil Samples	7777
Animal Samples	11681
Plant Samples	2835
Total Samples	28787

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10855]	Pathogenicity (human)	yes, in single cases
[Ref.: #10855]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #124043]	Rhodococcus erythropolis gene for 16S rRNA type I, partial sequence, strain: JCM 3191.	AB429545	1440	GenBank ENA	1833 tax ID	*
[Ref.: #124043]	Rhodococcus erythropolis gene for 16S rRNA type II, partial sequence, strain: JCM 3191.	AB429552	1440	GenBank ENA	1833 tax ID	*
[Ref.: #20218]	Rhodococcus erythropolis partial 16S rRNA	X53203	1366	GenBank ENA	1833 tax ID	*
[Ref.: #20218]	Rhodococcus erythropolis strain ATCC 19369 16S ribosomal RNA gene, partial sequence	AY281108	975	GenBank ENA	1833 tax ID	*
[Ref.: #20218]	Rhodococcus erythropolis ATCC 19369 16S ribosomal RNA gene, partial sequence	AY017130	625	GenBank ENA	1833 tax ID	*
[Ref.: #20218]	Rhodococcus erythropolis 16S rRNA gene, strain DSM43188T	X80618	1476	GenBank ENA	1833 tax ID	*

Availability in culture collections External links

[Ref.: #10855]

Culture collection no.

DSM 43188, ATCC 19369, CBS 613.67, CCM 2597, NCIB 8863, JCM 3191, BCRC 13743, IMET 7472, KCTC 9077, MTCC 1548, NBIMCC 1358, NCAIM B.01653, NCIMB 8863

[Ref.: #80123]

SI-ID 311081

References

#10855

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43188

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80123

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID311081.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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