Strain identifier
BacDive ID: 10867
Type strain: 
Species: Nocardia calcarea
Strain history: KCC A-0191 <-- AJ 9107 <-- NCIB 8863 <-- M. E. Brown.
NCBI tax ID(s): 1833 (species)
version 8.1 (current version)
General
@ref: 10855
BacDive-ID: 10867
DSM-Number: 43188
keywords: 16S sequence, Bacteria, mesophilic, human pathogen
description: Nocardia calcarea DSM 43188 is a mesophilic human pathogen that was isolated from chalky grassland.
NCBI tax id
- NCBI tax id: 1833
- Matching level: species
strain history
| @ref | history |
|---|---|
| 10855 | <- I. J. Bousfield, NCIB (Nocardia calcarea) <- M. E. Brown |
| 67770 | KCC A-0191 <-- AJ 9107 <-- NCIB 8863 <-- M. E. Brown. |
doi: 10.13145/bacdive10867.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Nocardiaceae
- genus: Nocardia
- species: Nocardia calcarea
- full scientific name: Nocardia calcarea Metcalfe and Brown 1957 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Arthrobacter picolinophilus
@ref: 10855
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardiaceae
genus: Rhodococcus
species: Rhodococcus erythropolis
full scientific name: Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 emend. Nouioui et al. 2018
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 10855 | BHI-GLUCOSE MEDIUM (DSMZ Medium 82) | yes | https://mediadive.dsmz.de/medium/82 | Name: BHI-GLUCOSE MEDIUM (DSMZ Medium 82) Composition: Brain heart infusion 18.5 g/l Agar 12.0 g/l Glucose 5.0 g/l Distilled water |
| 10855 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 10855 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-8(H2)
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 10855 | chalky grassland | United Kingdom | GBR | Europe |
| 67770 | Chalky grassland soil | United Kingdom | GBR | Europe |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Grassland
taxonmaps
- @ref: 69479
- File name: preview.99_1118.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_181;97_585;98_672;99_1118&stattab=map
- Last taxonomy: Nocardiaceae
- 16S sequence: X80618
- Sequence Identity:
- Total samples: 28787
- soil counts: 7777
- aquatic counts: 6494
- animal counts: 11681
- plant counts: 2835
Safety information
risk assessment
- @ref: 10855
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Rhodococcus erythropolis ATCC 19369 16S ribosomal RNA gene, partial sequence | AY017130 | 625 | ena | 1833 |
| 20218 | Rhodococcus erythropolis strain ATCC 19369 16S ribosomal RNA gene, partial sequence | AY281108 | 975 | ena | 1833 |
| 20218 | Rhodococcus erythropolis partial 16S rRNA | X53203 | 1366 | ena | 1833 |
| 20218 | Rhodococcus erythropolis 16S rRNA gene, strain DSM43188T | X80618 | 1476 | ena | 1833 |
External links
@ref: 10855
culture collection no.: DSM 43188, ATCC 19369, CBS 613.67, CCM 2597, NCIB 8863, JCM 3191, BCRC 13743, IMET 7472, KCTC 9077, MTCC 1548, NBIMCC 1358, NCAIM B.01653, NCIMB 8863
straininfo link
- @ref: 80123
- straininfo: 311081
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10855 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43188) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43188 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 80123 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID311081.1 | StrainInfo: A central database for resolving microbial strain identifiers |