Name: Rhodococcus erythropolis BG43
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 157817

Type strain:

Species: Rhodococcus erythropolis

Strain Designation: BG43

Culture col. no.: DSM 46869

Strain history: <- S. Fetzner, University of Münster; BG43 <- C. Müller, IMMB, University of Münster

NCBI tax ID(s): 1833 (species)

SI-ID 399013

DSM 46869

Other strains from Rhodococcus erythropolis

Section

Rhodococcus erythropolis BG43 is a mesophilic human pathogen that was isolated from soil sample from the botanical garden.

human pathogen
mesophilic
16S sequence
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Genus	*Rhodococcus*
	Species	**Rhodococcus erythropolis**
	Full Scientific Name (LPSN)	Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 (Approved Lists 1980)

	Synonym	"Mycobacterium* erythropolis"*
	Synonym	Rhodococcus qingshengii
	Synonym	Rhodococcus baikonurensis
	Synonym	Rhodococcus jialingiae
	Synonym	Rhodococcus enclensis
	Synonym	Rhodococcus degradans

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %95.437

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64390]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #64390]

Culture medium growth

[Ref.: #64390]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64390]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #64390]			growth	28 °C

[Ref.: #64390]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.416
[Ref.: #69481]	Ability of spore formation	no Confidence in %97

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64390]	Sample type/isolated from	soil sample from the botanical garden
[Ref.: #64390]	Geographic location (country and/or sea, region)	Münster (51° 57' 48.4'' N, 7° 36' 41.0'' E)
[Ref.: #64390]	Country	Germany
[Ref.: #64390]	Country ISO 3 Code	DEU
[Ref.: #64390]	Continent	Europe
[Ref.: #64390]	Geographic location	51.9634°/7.6114°
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Garden
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KM093741 (>99% sequence identity) for Nocardiaceae from Microbeatlas

Aquatic Samples	6494
Soil Samples	7777
Animal Samples	11681
Plant Samples	2835
Total Samples	28787

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64390]	Pathogenicity (human)	yes, in single cases
[Ref.: #64390]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64390]	Rhodococcus sp. BG43 16S ribosomal RNA gene, partial sequence	KM093741	1359	ENA	1833 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodococcus erythropolis BG43	GCA_000975175	complete	GenBank	1833 tax ID	*
[Ref.: #66792]	Rhodococcus erythropolis strain BG43	1833.106	plasmid	PATRIC	1833 tax ID	*
[Ref.: #66792]	Rhodococcus erythropolis strain BG43	1833.108	plasmid	PATRIC	1833 tax ID	*
[Ref.: #66792]	Rhodococcus erythropolis strain BG43	1833.107	plasmid	PATRIC	1833 tax ID	*
[Ref.: #66792]	Rhodococcus erythropolis strain BG43	1833.80	complete	PATRIC	1833 tax ID	*
[Ref.: #66792]	Rhodococcus erythropolis BG43	2654588023	complete	JGI IMG/M	1833 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhodococcus erythropolis strain BG43 PATRIC: 1833.80
[Ref.: #69481]	spore-forming	no	97	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodococcus erythropolis BG43 NCBI: GCA_000975175.1
[Ref.: #69480]	motile	no	92.936	no
[Ref.: #69480]	flagellated	no	98.291	no
[Ref.: #69480]	gram-positive	yes	85.158	no
[Ref.: #69480]	anaerobic	no	99.366	no
[Ref.: #69480]	aerobic	yes	90.267	no
[Ref.: #69480]	halophile	no	92.233	no
[Ref.: #69480]	spore-forming	no	68.977	no
[Ref.: #69480]	glucose-util	yes	89.807	no
[Ref.: #69480]	thermophile	no	99.446	no
[Ref.: #69480]	glucose-ferment	no	89.321	no

Availability in culture collections External links

[Ref.: #64390]

Culture collection no.

DSM 46869

[Ref.: #110672]

SI-ID 399013

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome sequence of Rhodococcus erythropolis BG43 (DSM 46869), a degrader of Pseudomonas aeruginosa quorum sensing signal molecules.	Ruckert C, Birmes FS, Muller C, Niewerth H, Winkler A, Fetzner S, Kalinowski J	J Biotechnol	10.1016/j.jbiotec.2015.07.014	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64390

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46869

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#110672

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399013.1 )

* These data were automatically processed and therefore are not curated

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Rhodococcus erythropolis strain BG43

Rhodococcus erythropolis BG43

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