Strain identifier

BacDive ID: 137083

Type strain: No

Species: Rhodococcus erythropolis

Strain history: CIP <- 1995, JCM <- IAM <- H. Lizuka and K. Komagata: strain Kp-10, Corynebacterium oleophilus

NCBI tax ID(s): 1833 (species)

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General

@ref: 36934

BacDive-ID: 137083

keywords: 16S sequence

description: Rhodococcus erythropolis CIP 104497 is a prokaryote.

NCBI tax id

  • NCBI tax id: 1833
  • Matching level: species

strain history

@refhistory
67770IAM 1399 <-- H. Iizuka and K. Komagata Kp-10.
36934CIP <- 1995, JCM <- IAM <- H. Lizuka and K. Komagata: strain Kp-10, Corynebacterium oleophilus

doi: 10.13145/bacdive137083.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • genus: Rhodococcus
  • species: Rhodococcus erythropolis
  • full scientific name: Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Mycobacterium erythropolis
    20215Rhodococcus qingshengii
    20215Rhodococcus baikonurensis
    20215Rhodococcus jialingiae
    20215Rhodococcus enclensis
    20215Rhodococcus degradans

@ref: 36934

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Nocardiaceae

genus: Rhodococcus

species: Rhodococcus erythropolis

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36934MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
36934CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperature
36934positivegrowth30
67770positivegrowth28

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-8(H2)

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample type
36934JapanJPNAsia
67770JapanJPNAsiaSoil in petroleum zone
36934JapanJPNAsiaEnvironment, Soil in petroleum zone

Safety information

risk assessment

  • @ref: 36934
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Rhodococcus erythropolis IAM 1399 16S ribosomal RNA gene, partial sequenceAY017138625nuccore1833
124043Rhodococcus erythropolis gene for 16S rRNA, partial sequence, strain: JCM 2892.AB4295471440nuccore1833

GC content

  • @ref: 67770
  • GC-content: 61.2
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 36934

culture collection no.: CIP 104497, ATCC 15963, IAM 1399, IFO 12538, JCM 2892, NBRC 12538

straininfo link

  • @ref: 94057
  • straininfo: 45597

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology7764017Characterization of nitrile hydratase genes cloned by DNA screening from Rhodococcus erythropolis.Duran R, Nishiyama M, Horinouchi S, Beppu TBiosci Biotechnol Biochem10.1271/bbb.57.13231993Amino Acid Sequence, Base Sequence, Blotting, Southern, Cloning, Molecular, DNA, Bacterial, *Genes, Bacterial, Hydro-Lyases/*genetics/metabolism, Molecular Sequence Data, Restriction Mapping, Rhodococcus/*enzymology/genetics, Sequence Homology, Amino Acid, Substrate SpecificityGenetics
Metabolism125140242-Hydroxypenta-2,4-dienoate metabolic pathway genes in a strong polychlorinated biphenyl degrader, Rhodococcus sp. strain RHA1.Sakai M, Miyauchi K, Kato N, Masai E, Fukuda MAppl Environ Microbiol10.1128/AEM.69.1.427-433.20032003Aldehyde Oxidoreductases/genetics/metabolism, Base Sequence, Biodegradation, Environmental, Fatty Acids, Unsaturated/*metabolism, Gene Deletion, Gene Expression Regulation, Bacterial, *Genes, Bacterial, Hydro-Lyases/genetics/metabolism, Molecular Sequence Data, Oxo-Acid-Lyases/genetics/metabolism, Polychlorinated Biphenyls/*metabolism, Rhodococcus/*genetics/growth & development/*metabolism, Transcription, GeneticGenetics
Metabolism15028699Characterization of transcriptional regulatory genes for biphenyl degradation in Rhodococcus sp. strain RHA1.Takeda H, Yamada A, Miyauchi K, Masai E, Fukuda MJ Bacteriol10.1128/JB.186.7.2134-2146.20042004Amino Acid Sequence, Bacterial Proteins/*genetics/metabolism, Base Sequence, Biodegradation, Environmental, Biphenyl Compounds/*metabolism, *Gene Expression Regulation, Bacterial, Iron-Sulfur Proteins/chemistry/genetics/metabolism, Molecular Sequence Data, Oxygenases/chemistry/genetics/metabolism, Promoter Regions, Genetic, Rhodococcus/genetics/growth & development/*metabolism, Sequence Analysis, DNA, Signal Transduction, *Transcription, GeneticGenetics
16535201Multiple Polychlorinated Biphenyl Transformation Systems in the Gram-Positive Bacterium Rhodococcus sp. Strain RHA1.Seto M, Masai E, Ida M, Hatta T, Kimbara K, Fukuda M, Yano KAppl Environ Microbiol10.1128/aem.61.12.4510-4513.19951995
Metabolism20622058Dual two-component regulatory systems are involved in aromatic compound degradation in a polychlorinated-biphenyl degrader, Rhodococcus jostii RHA1.Takeda H, Shimodaira J, Yukawa K, Hara N, Kasai D, Miyauchi K, Masai E, Fukuda MJ Bacteriol10.1128/JB.00429-102010Bacterial Proteins/genetics/*metabolism, Genetic Complementation Test, Molecular Sequence Data, Polychlorinated Biphenyls/*metabolism, Reverse Transcriptase Polymerase Chain Reaction, Rhodococcus/enzymology/genetics/*metabolismGenetics
Metabolism23415487Gene cluster and regulation system for 1,1-dichloro-2,2-bis(4-chlorophenyl)ethylene (DDE) degradation in Janibacter sp. TYM3221.Nguyen PA, Trinh TH, Fukumitsu Y, Shimodaira J, Miyauchi K, Tokuda M, Kasai D, Masai E, Fukuda MJ Biosci Bioeng10.1016/j.jbiosc.2013.01.0072013Actinomycetales/*genetics/metabolism, Base Sequence, Biphenyl Compounds/metabolism, Consensus Sequence, Dichlorodiphenyl Dichloroethylene/chemistry/*metabolism, Dioxygenases/genetics/metabolism, *Gene Expression Regulation, Bacterial, Molecular Sequence Data, Operon, Promoter Regions, Genetic, Rhodococcus/genetics/metabolismGenetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36934Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104497Collection of Institut Pasteur (CIP 104497)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
94057Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID45597.1
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy