Enterococcus faecium JCM 8905 is a bacterium that was isolated from Blood.
genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Bacillota |
| Class Bacilli |
| Order Lactobacillales |
| Family Enterococcaceae |
| Genus Enterococcus |
| Species Enterococcus faecium |
| Full scientific name Enterococcus faecium (Orla-Jensen 1919) Schleifer and Kilpper-Bälz 1984 |
| Synonyms (1) |
| @ref | Gram stain | Confidence | |
|---|---|---|---|
| 125438 | positive | 91.935 |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 67770 | positive | growth | 37 |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | obligate aerobe | 94.48 |
| 67770 | Sample typeBlood |
Global distribution of 16S sequence AB690254 (>99% sequence identity) for Enterococcus from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | 44738_B02 assembly for Enterococcus hirae NCTC12204 | contig | 1354 | 77.75 | |||
| 124043 | PDT000701687.1 assembly for Enterococcus faecium NCTC 12204 | contig | 1352 | 9 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 67770 | Enterococcus faecium gene for 16S rRNA, partial sequence, strain: JCM 8905 | AB690254 | 1449 | 1352 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | gram_stain | BacteriaNetⓘ | variable | 54.20 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 94.48 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 68.78 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 59.50 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 91.94 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 87.72 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 82.68 | no |
| 125438 | aerobic | aerobicⓘ | no | 96.15 | no |
| 125438 | thermophilic | thermophileⓘ | no | 96.50 | no |
| 125438 | flagellated | motile2+ⓘ | no | 89.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Dicarboxylate and dicarboxylic acid appended supramolecular self-associating amphiphiles as antimicrobial agents against high priority bacterial pathogens. | White LJ, Streather B, Sutton JM, Rankin J, Baker J, Bennett C, Wilson HB, Hind CK, Hiscock JR. | Org Biomol Chem | 10.1039/d5ob01615k | 2025 | ||
| Vancomycin-resistant enterococci utilise antibiotic-enriched nutrients for intestinal colonisation. | King OG, Yip AYG, Horrocks V, Miguens Blanco J, Marchesi JR, Mullish BH, Clarke TB, McDonald JAK. | Nat Commun | 10.1038/s41467-025-61731-z | 2025 | ||
| Identifying single-strain growth patterns of human gut microbes in response to preterm human milk and formula. | Engevik MA, Stripe LK, Baatz JE, Wagner CL, Chetta KE. | Food Funct | 10.1039/d2fo00447j | 2022 | ||
| Pathogenicity | Antimicrobial spectrum against wound pathogens and cytotoxicity of star-arranged poly-l-lysine-based antimicrobial peptide polymers. | Doherty A, Murphy R, Heise A, Fitzpatrick F, Fitzgerald-Hughes D. | J Med Microbiol | 10.1099/jmm.0.001886 | 2024 | |
| Synergy between Winter Flounder antimicrobial peptides. | Clarke M, Hind CK, Ferguson PM, Manzo G, Mistry B, Yue B, Romanopulos J, Clifford M, Bui TT, Drake AF, Lorenz CD, Sutton JM, Mason AJ. | NPJ Antimicrob Resist | 10.1038/s44259-023-00010-7 | 2023 | ||
| Strategies to Improve the Potency of Oxazolidinones towards Bacterial Biofilms. | Ndukwe ARN, Wiedbrauk S, Boase NRB, Fairfull-Smith KE. | Chem Asian J | 10.1002/asia.202200201 | 2022 | ||
| Pathogenicity | Survival of nosocomial bacteria and spores on surfaces and inactivation by hydrogen peroxide vapor. | Otter JA, French GL. | J Clin Microbiol | 10.1128/jcm.02004-08 | 2009 | |
| Bolaamphiphile Analogues of 12-bis-THA Cl2 Are Potent Antimicrobial Therapeutics with Distinct Mechanisms of Action against Bacterial, Mycobacterial, and Fungal Pathogens. | Di Blasio S, Clarke M, Hind CK, Asai M, Laurence L, Benvenuti A, Hassan M, Semenya D, Man DK, Horrocks V, Manzo G, Van Der Lith S, Lam C, Gentile E, Annette C, Bosse J, Li Y, Panaretou B, Langford PR, Robertson BD, Lam JKW, Sutton JM, McArthur M, Mason AJ. | mSphere | 10.1128/msphere.00508-22 | 2023 | ||
| Synthesis and Biological Studies of Benzo[b]furan Derivatives: A Review from 2011 to 2022. | Arce-Ramos L, Castillo JC, Becerra D. | Pharmaceuticals (Basel) | 10.3390/ph16091265 | 2023 | ||
| A pleurocidin analogue with greater conformational flexibility, enhanced antimicrobial potency and in vivo therapeutic efficacy. | Manzo G, Hind CK, Ferguson PM, Amison RT, Hodgson-Casson AC, Ciazynska KA, Weller BJ, Clarke M, Lam C, Man RCH, Shaughnessy BGO, Clifford M, Bui TT, Drake AF, Atkinson RA, Lam JKW, Pitchford SC, Page CP, Phoenix DA, Lorenz CD, Sutton JM, Mason AJ. | Commun Biol | 10.1038/s42003-020-01420-3 | 2020 | ||
| Pathogenicity | A Review on Flavonoid Apigenin: Dietary Intake, ADME, Antimicrobial Effects, and Interactions with Human Gut Microbiota. | Wang M, Firrman J, Liu L, Yam K. | Biomed Res Int | 10.1155/2019/7010467 | 2019 | |
| Pathogenicity | Phenotypic and genotypic heterogeneity of glycopeptide resistance determinants in gram-positive bacteria. | Dutka-Malen S, Leclercq R, Coutant V, Duval J, Courvalin P. | Antimicrob Agents Chemother | 10.1128/aac.34.10.1875 | 1990 | |
| Pathogenicity | In vitro activities of three semisynthetic amide derivatives of teicoplanin, MDL 62208, MDL 62211, and MDL 62873. | Biavasco F, Lupidi R, Varaldo PE. | Antimicrob Agents Chemother | 10.1128/aac.36.2.331 | 1992 | |
| Pathogenicity | Use of primers selective for vancomycin resistance genes to determine van genotype in enterococci and to study gene organization in VanA isolates. | Miele A, Bandera M, Goldstein BP. | Antimicrob Agents Chemother | 10.1128/aac.39.8.1772 | 1995 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
You found an error in BacDive? Please tell us about it!
Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.
Successfully sent
If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive165968.20260601.11
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data