Enterococcus faecalis JCM 8904 is a bacterium that was isolated from Renal transplant wound drain urine.
genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Bacillota |
| Class Bacilli |
| Order Lactobacillales |
| Family Enterococcaceae |
| Genus Enterococcus |
| Species Enterococcus faecalis |
| Full scientific name Enterococcus faecalis (Andrewes and Horder 1906) Schleifer and Kilpper-Bälz 1984 |
| Synonyms (1) |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 67770 | positive | growth | 37 |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | microaerophile | 94.5 |
| 67770 | Sample typeRenal transplant wound drain urine |
Global distribution of 16S sequence AB690253 (>99% sequence identity) for Enterococcus from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | 44310_A02 assembly for Enterococcus faecalis NCTC12203 | contig | 1351 | 68.38 | |||
| 124043 | PDT000701682.1 assembly for Enterococcus faecalis NCTC 12203 | contig | 1351 | 29.6 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 67770 | Enterococcus faecalis gene for 16S rRNA, partial sequence, strain: JCM 8904 | AB690253 | 1502 | 1351 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | yes | 59.60 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 54.70 | no |
| 125439 | gram_stain | BacteriaNetⓘ | variable | 72.30 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | microaerophile | 94.50 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 86.59 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 84.89 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 75.43 | no |
| 125438 | aerobic | aerobicⓘ | no | 93.33 | no |
| 125438 | thermophilic | thermophileⓘ | no | 96.00 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 85.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Assessment of the feed additive consisting of red carotenoid-rich Paracoccus carotinifaciens NITE SD 00017 for salmon and trout for the renewal of its authorisation (ENEOS Techno Materials Corporation). | EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Bampidis V, Azimonti G, Bastos ML, Christensen H, Durjava M, Dusemund B, Kouba M, Lopez-Alonso M, Lopez Puente S, Marcon F, Mayo B, Pechova A, Petkova M, Ramos F, Villa RE, Woutersen R, Bories G, Brantom P, Gropp J, Dioni A, Galobart J, Holczknecht O, Revez J, Vettori MV. | EFSA J | 10.2903/j.efsa.2024.8905 | 2024 | ||
| BioSAXS Measurements Reveal That Two Antimicrobial Peptides Induce Similar Molecular Changes in Gram-Negative and Gram-Positive Bacteria. | von Gundlach A, Ashby MP, Gani J, Lopez-Perez PM, Cookson AR, Ann Huws S, Rumancev C, Garamus VM, Mikut R, Rosenhahn A, Hilpert K. | Front Pharmacol | 10.3389/fphar.2019.01127 | 2019 | ||
| Pathogenicity | A Review on Flavonoid Apigenin: Dietary Intake, ADME, Antimicrobial Effects, and Interactions with Human Gut Microbiota. | Wang M, Firrman J, Liu L, Yam K. | Biomed Res Int | 10.1155/2019/7010467 | 2019 | |
| Pathogenicity | Use of primers selective for vancomycin resistance genes to determine van genotype in enterococci and to study gene organization in VanA isolates. | Miele A, Bandera M, Goldstein BP. | Antimicrob Agents Chemother | 10.1128/aac.39.8.1772 | 1995 | |
| Pathogenicity | Phenotypic and genotypic heterogeneity of glycopeptide resistance determinants in gram-positive bacteria. | Dutka-Malen S, Leclercq R, Coutant V, Duval J, Courvalin P. | Antimicrob Agents Chemother | 10.1128/aac.34.10.1875 | 1990 | |
| Pathogenicity | In vitro activities of three semisynthetic amide derivatives of teicoplanin, MDL 62208, MDL 62211, and MDL 62873. | Biavasco F, Lupidi R, Varaldo PE. | Antimicrob Agents Chemother | 10.1128/aac.36.2.331 | 1992 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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