Enterococcus faecium JCM 8903 is a bacterium that was isolated from CVP site.
genome sequence 16S sequence Bacteria| @ref 20215 |
|
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| Domain Bacteria |
| Phylum Bacillota |
| Class Bacilli |
| Order Lactobacillales |
| Family Enterococcaceae |
| Genus Enterococcus |
| Species Enterococcus faecium |
| Full scientific name Enterococcus faecium (Orla-Jensen 1919) Schleifer and Kilpper-Bälz 1984 |
| Synonyms (1) |
| @ref | Gram stain | Confidence | |
|---|---|---|---|
| 125438 | positive | 92.014 |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 67770 | positive | growth | 37 |
| 67770 | Sample typeCVP site |
Global distribution of 16S sequence AB690252 (>99% sequence identity) for Enterococcus from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | 42912_B02 assembly for Enterococcus faecium NCTC12202 | contig | 1352 | 75.72 | |||
| 124043 | PDT000701683.1 assembly for Enterococcus faecium NCTC 12202 | contig | 1352 | 22 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 67770 | Enterococcus faecium gene for 16S rRNA, partial sequence, strain: JCM 8903 | AB690252 | 1454 | 1352 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 76.47 | no |
| 125439 | gram_stain | BacteriaNetⓘ | variable | 57.97 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 36.01 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 44.65 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 92.01 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 90.74 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 78.35 | no |
| 125438 | aerobic | aerobicⓘ | no | 95.98 | no |
| 125438 | thermophilic | thermophileⓘ | no | 97.50 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 87.50 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Vancomycin-resistant enterococci utilise antibiotic-enriched nutrients for intestinal colonisation. | King OG, Yip AYG, Horrocks V, Miguens Blanco J, Marchesi JR, Mullish BH, Clarke TB, McDonald JAK. | Nat Commun | 10.1038/s41467-025-61731-z | 2025 | ||
| Simultaneous inactivation of antibiotic-resistant bacteria and degradation of antibiotic-resistant genes in alkalised human urine. | Demissie N, Nordin A, Simha P, Conroy I, Sun H, Schnurer A, Vinneras B, Desta A. | Front Microbiol | 10.3389/fmicb.2025.1605625 | 2025 | ||
| Improving Turnaround Times for Routine Antimicrobial Sensitivity Testing Following European Committee on Antimicrobial Susceptibility Testing Methodology in Patients with Bacteraemia. | Edmondson R, Saeed K, Green S, O'Dwyer M. | Antibiotics (Basel) | 10.3390/antibiotics13111094 | 2024 | ||
| Pathogenicity | Mechanism of copper surface toxicity in vancomycin-resistant enterococci following wet or dry surface contact. | Warnes SL, Keevil CW. | Appl Environ Microbiol | 10.1128/aem.00597-11 | 2011 | |
| Pathogenicity | Biocidal efficacy of copper alloys against pathogenic enterococci involves degradation of genomic and plasmid DNAs. | Warnes SL, Green SM, Michels HT, Keevil CW. | Appl Environ Microbiol | 10.1128/aem.03050-09 | 2010 | |
| Enzymology | Excretion of vancomycin-resistant enterococci by wild mammals. | Mallon DJ, Corkill JE, Hazel SM, Wilson JS, French NP, Bennett M, Hart CA. | Emerg Infect Dis | 10.3201/eid0806.010247 | 2002 | |
| Pathogenicity | Isolation and characterization of glycopeptide-resistant enterococci from hospitalized patients over a 30-month period. | Nelson RR, McGregor KF, Brown AR, Amyes SG, Young H. | J Clin Microbiol | 10.1128/jcm.38.6.2112-2116.2000 | 2000 | |
| Pathogenicity | Phenotypic and genotypic heterogeneity of glycopeptide resistance determinants in gram-positive bacteria. | Dutka-Malen S, Leclercq R, Coutant V, Duval J, Courvalin P. | Antimicrob Agents Chemother | 10.1128/aac.34.10.1875 | 1990 | |
| Pathogenicity | A Review on Flavonoid Apigenin: Dietary Intake, ADME, Antimicrobial Effects, and Interactions with Human Gut Microbiota. | Wang M, Firrman J, Liu L, Yam K. | Biomed Res Int | 10.1155/2019/7010467 | 2019 | |
| Phylogeny | Application of DNA probes for rRNA and vanA genes to investigation of a nosocomial cluster of vancomycin-resistant enterococci. | Woodford N, Morrison D, Johnson AP, Briant V, George RC, Cookson B. | J Clin Microbiol | 10.1128/jcm.31.3.653-658.1993 | 1993 | |
| Pathogenicity | Use of primers selective for vancomycin resistance genes to determine van genotype in enterococci and to study gene organization in VanA isolates. | Miele A, Bandera M, Goldstein BP. | Antimicrob Agents Chemother | 10.1128/aac.39.8.1772 | 1995 | |
| Pathogenicity | In vitro activities of three semisynthetic amide derivatives of teicoplanin, MDL 62208, MDL 62211, and MDL 62873. | Biavasco F, Lupidi R, Varaldo PE. | Antimicrob Agents Chemother | 10.1128/aac.36.2.331 | 1992 | |
| Phylogeny | Characterization of bacterial communities in feces from healthy elderly volunteers and hospitalized elderly patients by using real-time PCR and effects of antibiotic treatment on the fecal microbiota. | Bartosch S, Fite A, Macfarlane GT, McMurdo ME. | Appl Environ Microbiol | 10.1128/aem.70.6.3575-3581.2004 | 2004 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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https://doi.org/10.13145/bacdive165966.20260601.11
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