Strain identifier
BacDive ID: 165968
Type strain: 
Species: Enterococcus faecium
Strain history: NCTC 12204 <-- A. H. C. Uttley No. 14.
NCBI tax ID(s): 1352 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 165968
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Enterococcus faecium JCM 8905 is a mesophilic, Gram-positive bacterium that was isolated from Blood.
NCBI tax id
- NCBI tax id: 1352
- Matching level: species
strain history
- @ref: 67770
- history: NCTC 12204 <-- A. H. C. Uttley No. 14.
doi: 10.13145/bacdive165968.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Enterococcaceae
- genus: Enterococcus
- species: Enterococcus faecium
- full scientific name: Enterococcus faecium (Orla-Jensen 1919) Schleifer and Kilpper-Bälz 1984
synonyms
- @ref: 20215
- synonym: Streptococcus faecium
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Enterococcaceae
genus: Enterococcus
species: Enterococcus faecium
full scientific name: Enterococcus faecium (Orla-Jensen 1919) Schleifer and Kilpper-B„lz 1984
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | positive | 100 | |
| 69480 | 90.268 | no |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.92 |
| 69481 | yes | 93 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Blood
taxonmaps
- @ref: 69479
- File name: preview.99_23.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_13;96_19;97_19;98_22;99_23&stattab=map
- Last taxonomy: Enterococcus
- 16S sequence: AB690254
- Sequence Identity:
- Total samples: 55544
- soil counts: 1007
- aquatic counts: 2532
- animal counts: 51351
- plant counts: 654
Sequence information
16S sequences
- @ref: 67770
- description: Enterococcus faecium gene for 16S rRNA, partial sequence, strain: JCM 8905
- accession: AB690254
- length: 1449
- database: ena
- NCBI tax ID: 1352
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Enterococcus hirae NCTC12204 | GCA_901482495 | contig | ncbi | 1354 |
| 66792 | Enterococcus faecium strain NCTC12204 | 1352.8297 | wgs | patric | 1352 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 93 | no |
| motile | no | 95.487 | no |
| gram-positive | yes | 94.447 | no |
| anaerobic | no | 94.972 | no |
| halophile | yes | 93.473 | no |
| spore-forming | no | 92.69 | no |
| thermophile | no | 99.689 | no |
| glucose-util | yes | 88.167 | no |
| flagellated | no | 97.975 | no |
| aerobic | no | 97.102 | no |
| glucose-ferment | yes | 89.735 | no |
External links
@ref: 67770
culture collection no.: JCM 8905, NCTC 12204
straininfo link
- @ref: 114682
- straininfo: 115034
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
| 114682 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID115034.1 |