Name: Agrobacterium radiobacter JCM 20988
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163046

Type strain:

Species: Agrobacterium radiobacter

Culture col. no.: JCM 20988, IAM 13934, NCPPB 1641

Strain history: IAM 13934 <-- NCPPB 1641 <-- A. C. Hayward B2100.

NCBI tax ID(s): 358 (species)

SI-ID 587

LMG 228, NCPPB 1641, IAM 13934, CFBP 4996, JCM 20988, CFBP 5502

Other strains from Agrobacterium radiobacter

Section

Agrobacterium radiobacter JCM 20988 is a mesophilic, Gram-negative bacterium that was isolated from Crown gall.

Gram-negative
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Agrobacterium*
	Species	**Agrobacterium radiobacter**
	Full Scientific Name (LPSN)	Agrobacterium radiobacter (Beijerinck and van Delden 1902) Conn 1942 (Approved Lists 1980)

	Synonym	"Bacillus* radiobacter"*
	Synonym	Rhizobium radiobacter
	Synonym	Beijerinckia fluminensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.988

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Crown gall
[Ref.: #67770]	Country	United Kingdom
[Ref.: #67770]	Country ISO 3 Code	GBR
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Agrobacterium deltaense NCPPB 1641	GCA_900012585	scaffold	GenBank	1183425 tax ID	*
[Ref.: #66792]	Agrobacterium genomosp. 7 str. NCPPB 1641 strain NCPPB 1641	1183425.5	wgs	PATRIC	1183425 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Agrobacterium deltaense NCPPB 1641 NCPPB 1641 NCBI: GCA_900012585.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Agrobacterium deltaense NCPPB 1641 NCPPB 1641 NCBI: GCA_900012585.1
[Ref.: #69480]	flagellated	no	73.103	no
[Ref.: #69480]	gram-positive	no	98.63	no
[Ref.: #69480]	anaerobic	no	97.765	no
[Ref.: #69480]	aerobic	yes	94.05	no
[Ref.: #69480]	halophile	no	91.103	no
[Ref.: #69480]	spore-forming	no	96.475	no
[Ref.: #69480]	glucose-ferment	no	88.869	no
[Ref.: #69480]	thermophile	no	99.179	yes
[Ref.: #69480]	glucose-util	yes	91.672	no
[Ref.: #69480]	motile	yes	86.496	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 20988, IAM 13934, NCPPB 1641

[Ref.: #113814]

SI-ID 587

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113814

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID587.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Rhizobium radiobacter in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Agrobacterium deltaense NCPPB 1641 NCPPB 1641

Agrobacterium deltaense NCPPB 1641 NCPPB 1641

Change proposal

Change proposal