Name: Agrobacterium radiobacter JCM 20988
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 163046

Type strain:

Species: Agrobacterium radiobacter

Culture col. no.: JCM 20988, IAM 13934, NCPPB 1641

Strain history: IAM 13934 <-- NCPPB 1641 <-- A. C. Hayward B2100.

NCBI tax ID(s): 362 (species)

SI-ID 587

LMG 228, NCPPB 1641, IAM 13934, CFBP 4996, JCM 20988, CFBP 5502

Special Collections

Other strains from Agrobacterium radiobacter

Section

Agrobacterium radiobacter JCM 20988 is a Gram-negative bacterium that was isolated from Crown gall.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Agrobacterium*
	Species	**Agrobacterium radiobacter**
	Full Scientific Name (LPSN)	Agrobacterium radiobacter (Beijerinck and van Delden 1902) Conn 1942 (Approved Lists 1980)

	Synonym	"Bacillus* radiobacter"*
	Synonym	Rhizobium radiobacter
	Synonym	Beijerinckia fluminensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.333

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %94.966
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Crown gall
[Ref.: #67770]	Country	United Kingdom
[Ref.: #67770]	Country ISO 3 Code	GBR
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Agrobacterium deltaense NCPPB 1641	GCA_900012585	scaffold	GenBank ENA	1183425 tax ID	*
[Ref.: #66792]	Agrobacterium genomosp. 7 str. NCPPB 1641 strain NCPPB 1641	1183425.5	wgs	PATRIC	1183425 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Agrobacterium deltaense NCPPB 1641 NCPPB 1641 NCBI: GCA_900012585.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Agrobacterium deltaense NCPPB 1641 NCPPB 1641 NCBI: GCA_900012585.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.333	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.289	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	83.481	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	94.966	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	99	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	70.743	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 20988, IAM 13934, NCPPB 1641

[Ref.: #113814]

SI-ID 587

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113814

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID587.1 )

* These data were automatically processed and therefore are not curated

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Agrobacterium deltaense NCPPB 1641 NCPPB 1641

Agrobacterium deltaense NCPPB 1641 NCPPB 1641

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