Strain identifier
BacDive ID: 163046
Type strain: 
Species: Agrobacterium radiobacter
Strain history: IAM 13934 <-- NCPPB 1641 <-- A. C. Hayward B2100.
NCBI tax ID(s): 362 (species)
version 9.1 (current version)
General
@ref: 67770
BacDive-ID: 163046
keywords: genome sequence, Bacteria, Gram-negative
description: Agrobacterium radiobacter JCM 20988 is a Gram-negative bacterium that was isolated from Crown gall.
NCBI tax id
- NCBI tax id: 362
- Matching level: species
strain history
- @ref: 67770
- history: IAM 13934 <-- NCPPB 1641 <-- A. C. Hayward B2100.
doi: 10.13145/bacdive163046.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Agrobacterium
- species: Agrobacterium radiobacter
- full scientific name: Agrobacterium radiobacter (Beijerinck and van Delden 1902) Conn 1942 (Approved Lists 1980)
synonyms
@ref synonym 20215 Bacillus radiobacter 20215 Rhizobium radiobacter 20215 Beijerinckia fluminensis
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Rhizobiaceae
genus: Rhizobium
species: Rhizobium radiobacter
full scientific name: Rhizobium radiobacter (Beijerinck and van Delden 1902) Young et al. 2001
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 98.333
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 25
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 94.966 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Crown gall
- country: United Kingdom
- origin.country: GBR
- continent: Europe
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Agrobacterium deltaense NCPPB 1641 | GCA_900012585 | scaffold | ncbi | 1183425 |
| 66792 | Agrobacterium genomosp. 7 str. NCPPB 1641 strain NCPPB 1641 | 1183425.5 | wgs | patric | 1183425 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.333 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 93.289 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 83.481 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 94.966 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 99 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 70.743 | no |
External links
@ref: 67770
culture collection no.: JCM 20988, IAM 13934, NCPPB 1641
straininfo link
- @ref: 113814
- straininfo: 587
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
| 113814 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID587.1 |