Agrobacterium radiobacter (CIP 104326, ATCC 4718, NBRC 12664)

Name: Agrobacterium radiobacter (CIP 104326, ATCC 4718, NBRC 12664)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 139082

Type strain

Culture col. no. CIP 104326 ATCC 4718 NBRC 12664 LMG 139 IFO 12664 2 more

NCBI tax ID(s) 362

Special Collections JCM CIP

Links

Agrobacterium radiobacter CIP 104326 is an obligate aerobe, mesophilic, Gram-negative prokaryote that was isolated from Soil.

Gram-negative rod-shaped obligate aerobe mesophilic

Name and taxonomic classification

SI-ID 418

LMG 139,ATCC 4718,IAM 1526,CIP 104326,IFO 12664,CECT 4360,NCAIM B.01302,NBRC 12664,CFBP 5764,JCM 20199

@ref 20215

Last LPSN update 2025-12-16 10:03:14

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Rhizobiaceae

Genus Agrobacterium

Species Agrobacterium radiobacter

Full scientific name Agrobacterium radiobacter (Beijerinck and van Delden 1902) Conn 1942 (Approved Lists 1980)

Synonyms (3)

"Bacillus radiobacter"
Rhizobium radiobacter
Beijerinckia fluminensis

BacDive ID	Other strains from **Agrobacterium radiobacter** (59)	Type strain
13580	A. radiobacter DSM 30147, ATCC 19358, IFO 13532, NBRC 13532, ... (type strain)
13581	A. radiobacter A 1, CCUG 3355, DSM 30150, ATCC 4720, CCM ... (type strain)
13576	A. radiobacter AK205, DSM 7215
13577	A. radiobacter d3I, DSM 9674
13579	A. radiobacter DSM 13874, NCPPB 4043
13582	A. radiobacter M 2/1, DSM 30199, DSM 60577, JCM 20987, IAM ...
13584	A. radiobacter B 6, B6, DSM 30205, ATCC 23308, CCM 1040, ...
13585	A. radiobacter F/1, DSM 30206, DSM 60575
13586	A. radiobacter 3/1, DSM 30207, DSM 60576
13587	A. radiobacter H-100, DSM 30208, DSM 60579, NCPPB 3837, ...
13589	A. radiobacter DSM 2108, CRIPP D57
100184	A. radiobacter ST032833(HKI), E008,
100185	A. radiobacter ST033150(HKI),
100186	A. radiobacter ST032607(HKI), F114a,
24476	A. radiobacter DSM 2327, UQM 1685, CCUG 53676, CIP 106281, ...
24823	A. radiobacter GV3101(pMP90), DSM 12364
134748	A. radiobacter B6 Tr, CIP 74.29
134990	A. radiobacter CIP 102835
136296	A. radiobacter CIP 104327, ATCC 6466, IFO 13127, JCM 20200, ...
136689	A. radiobacter 90A, CIP 107749, CCUG 51326
137356	A. radiobacter B62, CIP 104334, ATCC 11157
137357	A. radiobacter TT134, 6-1-2, CIP 104336, ATCC 15955
137527	A. radiobacter 500, CIP 70.51, ATCC 17983
137660	A. radiobacter 81.83, CIP 100088
137664	A. radiobacter C58, CIP 104333, ATCC 33970
137832	A. radiobacter CIP 101091
137982	A. radiobacter 358-86, CIP 102371
139214	A. radiobacter 572-85, CIP 101768
141516	A. radiobacter CCUG 2516, NRRL B-181
141594	A. radiobacter CCUG 3370
142441	A. radiobacter CCUG 12508
142442	A. radiobacter CCUG 12509, LMG 385
143154	A. radiobacter CCUG 17511
145747	A. radiobacter CCUG 29471
146695	A. radiobacter CCUG 31962
146956	A. radiobacter CCUG 32540
146960	A. radiobacter CCUG 32544
147074	A. radiobacter CCUG 32799
147077	A. radiobacter CCUG 32804
147384	A. radiobacter CCUG 33502
147440	A. radiobacter CCUG 33585
150676	A. radiobacter CCUG 41940
150928	A. radiobacter CCUG 42766
152911	A. radiobacter CCUG 47961
153141	A. radiobacter CCUG 48560
153176	A. radiobacter CCUG 48648
153197	A. radiobacter CCUG 48700 B
153447	A. radiobacter CCUG 49619
153627	A. radiobacter CCUG 50385 B
157291	A. radiobacter IMI 347314
157292	A. radiobacter IMI 350781
157293	A. radiobacter IMI 347313
157294	A. radiobacter IMI 347316
157295	A. radiobacter IMI 347322
157296	A. radiobacter IMI 347323
157297	A. radiobacter IMI 347324
157298	A. radiobacter IMI 347312
157514	A. radiobacter IMI 389299
157515	A. radiobacter IMI 505624a

Morphology

Cell morphology

@ref	Gram stain	Cell shape
41120	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
41120	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
41120	CIP Medium 3			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
41120	positive	growth	30	mesophilic
41120	positive	growth	25-30	mesophilic
41120	negative	growth	5
41120	negative	growth	10
41120	negative	growth	41
67770	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

41120

Oxygen toleranceobligate aerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
41120	4853 ChEBI	esculin	+	hydrolysis
41120	17234 ChEBI	glucose	+	degradation
41120	17632 ChEBI	nitrate	+	reduction
41120	16301 ChEBI	nitrite	+	reduction
41120	132112 ChEBI	sodium thiosulfate	+	builds gas from

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
41120	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
41120	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
41120	alcohol dehydrogenase	-	1.1.1.1
41120	amylase	-
41120	beta-galactosidase	+	3.2.1.23
41120	caseinase	-	3.4.21.50
41120	catalase	+	1.11.1.6
41120	DNase	-
41120	lecithinase	-
41120	lysine decarboxylase	-	4.1.1.18
41120	ornithine decarboxylase	-	4.1.1.17
41120	oxidase	+
41120	tween esterase	+
41120	urease	+	3.5.1.5

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
41120	not determinedn.d.	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	-	+	-	-	-	-	-	-	+	+	-	+	-	-	+	-	+	-	-	+	+	-	+	+	+	-	-	-	-	-	-	+	-	+	-	+	-	-	-	+	+	-	-	-	-	-	+	-	+	+	+	+	-	+	+	-	+	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Soil	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
41120	1	Risk group (French classification)

Sequence information

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Introduction of bacteriophage Mu into bacteria of various genera and intergeneric gene transfer by RP4::Mu.	Murooka Y, Takizawa N, Harada T.	J Bacteriol	10.1128/jb.145.1.358-368.1981	1981
Enzymology	NADP(+)-dependent D-threonine dehydrogenase from Pseudomonas cruciviae IFO 12047.	Misono H, Kato I, Packdibamrung K, Nagata S, Nagasaki S.	Appl Environ Microbiol	10.1128/aem.59.9.2963-2968.1993	1993
Metabolism	Occurrence of taurine: -ketoglutarate aminotransferase in bacterial extracts.	Toyama S, Soda K.	J Bacteriol	10.1128/jb.109.2.533-538.1972	1972
Enzymology	Characterization of 5-aminolevulinate synthase from Agrobacterium radiobacter, screening new inhibitors for 5-aminolevulinate dehydratase from Escherichia coli and their potential use for high 5-aminolevulinate production.	Lin J, Fu W, Cen P	Bioresour Technol	10.1016/j.biortech.2008.11.008	2008
Enzymology	Cloning and nucleotide sequence of the hemA gene of Agrobacterium radiobacter.	Drolet M, Sasarman A	Mol Gen Genet	10.1007/BF00273610	1991
Metabolism	Direct evidence of the Entner-Doudoroff pathway operating in the metabolism of D-glucosamine in bacteria.	Iwamoto R, Imanaga Y	J Biochem		1991
Metabolism	D-glucosaminate dehydratase from Agrobacterium radiobacter. Physicochemical and enzymological properties.	Iwamoto R, Imanaga Y, Soda K	J Biochem	10.1093/oxfordjournals.jbchem.a133686	1982

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#41120	Collection of Institut Pasteur ; Curators of the CIP; CIP 104326
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Agrobacterium radiobacter (CIP 104326, ATCC 4718, NBRC 12664)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

API biotype100

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome-based predictions

Literature

Literature

References

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