Name: Agrobacterium radiobacter CIP 104326
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 139082

Type strain:

Species: Agrobacterium radiobacter

Culture col. no.: CIP 104326, ATCC 4718, JCM 20199, IAM 1526, IFO 12664, LMG 139, NBRC 12664

Strain history: CIP <- 1995, ATCC, Agrobacterium tumefaciens <- I.L. Baldwin: strain R-3, Bacillus radiobacter

NCBI tax ID(s): 358 (species)

SI-ID 418

LMG 139, ATCC 4718, IAM 1526, CIP 104326, IFO 12664, CECT 4360, NCAIM B.01302, NBRC 12664, CFBP 5764, JCM 20199

Other strains from Agrobacterium radiobacter

Section

Agrobacterium radiobacter CIP 104326 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from Soil.

Gram-negative
rod-shaped
mesophilic
obligate aerobe
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Agrobacterium*
	Species	**Agrobacterium radiobacter**
	Full Scientific Name (LPSN)	Agrobacterium radiobacter (Beijerinck and van Delden 1902) Conn 1942 (Approved Lists 1980)

	Synonym	"Bacillus* radiobacter"*
	Synonym	Rhizobium radiobacter
	Synonym	Beijerinckia fluminensis

Information on morphological and physiological properties Morphology

[Ref.: #41120]	Gram stain	negative

[Ref.: #41120]	Cell shape	rod-shaped

Information on culture and growth conditions Culture and growth conditions

[Ref.: #41120]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #41120]

Culture medium growth

[Ref.: #41120]

Culture medium composition

expand / minimize

[Ref.: #41120]

Culture medium

CIP Medium 3

[Ref.: #41120]

Culture medium growth

[Ref.: #41120]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #41120]		growth	30 °C
[Ref.: #41120]		growth	25-30 °C
[Ref.: #41120]	no	growth	5 °C
[Ref.: #41120]	no	growth	10 °C
[Ref.: #41120]	no	growth	41 °C
[Ref.: #67770]		growth	25 °C

[Ref.: #41120]	Temperature range	mesophilic
[Ref.: #41120]	Temperature range	psychrophilic
[Ref.: #41120]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #41120]

Oxygen tolerance

obligate aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #41120]	esculin ChEBI	+	hydrolysis
[Ref.: #41120]	glucose ChEBI	+	degradation
[Ref.: #41120]	nitrate ChEBI	+	reduction
[Ref.: #41120]	nitrite ChEBI	+	reduction
[Ref.: #41120]	sodium thiosulfate ChEBI	+	builds gas from

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #41120]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #41120]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #41120]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #41120]	amylase	-
[Ref.: #41120]	beta-galactosidase	+	3.2.1.23
[Ref.: #41120]	caseinase	-	3.4.21.50
[Ref.: #41120]	catalase	+	1.11.1.6
[Ref.: #41120]	DNase	-
[Ref.: #41120]	lecithinase	-
[Ref.: #41120]	lysine decarboxylase	-	4.1.1.18
[Ref.: #41120]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #41120]	oxidase	+
[Ref.: #41120]	tween esterase	+
[Ref.: #41120]	urease	+	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #41120]	632	not determinedn.d.	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	-	+	-	-	-	-	-	-	+	+	-	+	-	-	+	-	+	-	-	+	+	-	+	+	+	-	-	-	-	-	-	+	-	+	-	+	-	-	-	+	+	-	-	-	-	-	+	-	+	+	+	+	-	+	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #41120]

Biosafety level

Risk group (French classification)

Availability in culture collections External links

[Ref.: #41120]

Culture collection no.

CIP 104326, ATCC 4718, JCM 20199, IAM 1526, IFO 12664, LMG 139, NBRC 12664

[Ref.: #95664]

SI-ID 418

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Characterization of 5-aminolevulinate synthase from Agrobacterium radiobacter, screening new inhibitors for 5-aminolevulinate dehydratase from Escherichia coli and their potential use for high 5-aminolevulinate production.	Lin J, Fu W, Cen P	Bioresour Technol	10.1016/j.biortech.2008.11.008	2008	*
Enzymology	Cloning and nucleotide sequence of the hemA gene of Agrobacterium radiobacter.	Drolet M, Sasarman A	Mol Gen Genet	10.1007/BF00273610	1991	*
Metabolism	Direct evidence of the Entner-Doudoroff pathway operating in the metabolism of D-glucosamine in bacteria.	Iwamoto R, Imanaga Y	J Biochem		1991	*
Metabolism	D-glucosaminate dehydratase from Agrobacterium radiobacter. Physicochemical and enzymological properties.	Iwamoto R, Imanaga Y, Soda K	J Biochem	10.1093/oxfordjournals.jbchem.a133686	1982	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#41120 Collection of Institut Pasteur ; Curators of the CIP; CIP 104326
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#95664

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID418.1 )

* These data were automatically processed and therefore are not curated

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