Name: Agrobacterium radiobacter B 6
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13584

Type strain:

Species: Agrobacterium radiobacter

Strain Designation: B 6, B6

Culture col. no.: DSM 30205, ATCC 23308, CCM 1040, CIP B6, DSM 60574, ICPB TT 3, NBRC 102589, NCPPB 397, CCUG 725, CIP 67.1, LMG 187, IAM 13129, JCM 20845, CCEB 758, HAMBI 1811, ICMP 5856, ICPB TT3, LMG 28, NCPPB 2437, NCTC 13543

Strain history: CIP <- 1967, P. Manigault <- A.C. Braun: strain B6

NCBI tax ID(s): 362 (species)

SI-ID 419

LMG 187, ATCC 23308, CCM 1040, CCUG 725, ICMP 5856, LMG 28, NCPPB 2437, NCPPB 397, PDDCC 5856, IAM 13129, NCIMB 13307, IMI 347314, CCM 2928, CIP 67.1, LMD 64.1, CECT 4119, CCRC 13210, CFBP 2413, NCAIM B.01287, NCCB 64001, BCRC 13210, HAMBI 1811, KACC 10736, NBIMCC 3310, NBRC 102589, CGMCC 1.2554, CFBP 42, JCM 20845, DSM 30205, DSM 60574

Special Collections

Other strains from Agrobacterium radiobacter

Section

Agrobacterium radiobacter B 6 is an aerobe, mesophilic, Gram-negative plant pathogen that was isolated from Malus sp., crown gall of apple seedling.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
plant pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Agrobacterium*
	Species	**Agrobacterium radiobacter**
	Full Scientific Name (LPSN)	Agrobacterium radiobacter (Beijerinck and van Delden 1902) Conn 1942 (Approved Lists 1980)

	Synonym	Rhizobium radiobacter
	Synonym	Beijerinckia fluminensis
	Synonym	"Bacillus* radiobacter"*

Information on morphological and physiological properties Morphology

[Ref.: #122121]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.333

[Ref.: #122121]	Cell shape	rod-shaped

[Ref.: #122121]	Motility	yes

[Ref.: #9202]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36619]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #36619]

Culture medium growth

[Ref.: #36619]

Culture medium composition

expand / minimize

[Ref.: #9202]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #9202]

Culture medium growth

[Ref.: #9202]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9202]

Culture medium composition

expand / minimize

[Ref.: #122121]

Culture medium

CIP Medium 3

[Ref.: #122121]

Culture medium growth

[Ref.: #122121]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #122121]

Culture medium

CIP Medium 72

[Ref.: #122121]

Culture medium growth

[Ref.: #122121]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #68368]

Culture medium

MacConkey medium * from API 20E

[Ref.: #68368]

Culture medium growth

* from API 20E

	Kind of temperature		Temperature
[Ref.: #9202]		growth	26 °C
[Ref.: #36619]		growth	30 °C
[Ref.: #44253]		growth	37 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #122121]		growth	30-37 °C
[Ref.: #122121]	no	growth	5 °C
[Ref.: #122121]	no	growth	10 °C
[Ref.: #122121]	no	growth	41 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #44253]	Oxygen tolerance	aerobe
[Ref.: #122121]	Oxygen tolerance	obligate aerobe

[Ref.: #122121]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %94.63
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #122121]	NaCl		growth	0-2	%
[Ref.: #122121]	NaCl	no	growth	4	%
[Ref.: #122121]	NaCl	no	growth	6	%
[Ref.: #122121]	NaCl	no	growth	8	%
[Ref.: #122121]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE, API 20E
[Ref.: #122121]	citrate ChEBI	-	carbon source
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE, API 20E
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68368]	D-mannitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #122121]	esculin ChEBI	+	hydrolysis
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE, API 20E
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #122121]	malonate ChEBI	-	assimilation
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	+	fermentation	* from API 20E
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #122121]	nitrate ChEBI	-	builds gas from
[Ref.: #122121]	nitrate ChEBI	-	reduction
[Ref.: #122121]	nitrate ChEBI	-	respiration
[Ref.: #68368]	nitrate ChEBI	+	reduction	* from API 20E
[Ref.: #122121]	nitrite ChEBI	-	builds gas from
[Ref.: #122121]	nitrite ChEBI	+	reduction
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE, API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #122121]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite	Production
[Ref.: #122121]	indole ChEBI	no
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68369]	indole ChEBI	no	* from API 20NE, API 20E
[Ref.: #68368]	nitrite ChEBI	yes	* from API 20E

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #122121]	acetoin ChEBI	-
[Ref.: #122121]	glucose ChEBI		+
[Ref.: #68368]	acetoin ChEBI	-			* from API 20E
[Ref.: #68369]	indole ChEBI			-	* from API 20NE, API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122121]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122121]	amylase	-
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE, API 20E
[Ref.: #122121]	beta-galactosidase	+	3.2.1.23
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym, API 20NE
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #9202]	catalase	+	1.11.1.6
[Ref.: #122121]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE, API 20E
[Ref.: #9202]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #122121]	gelatinase	-
[Ref.: #68369]	gelatinase	-		* from API 20NE, API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122121]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #122121]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #122121]	oxidase	+
[Ref.: #122121]	urease	+	3.5.1.5
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #44253]

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	77.6	17.824
C16:0	9.1	16
C14:0 3OH/C16:1 ISO I	6.1	15.485
C19:0 CYCLO ω8c	3.6	18.9
C16:0 3OH	2.2	17.52
C16:1 ω7c	1.5	15.819

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #9202]	18538	+	-	-	-	+	-	+	+/-	-	-	-	-	-	+	-	-	+/-	-	+	+	+	+	not determinedn.d.	not determinedn.d.	+	not determinedn.d.	not determinedn.d.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #9202]	27702	+	-	-	-	+	+	-	+	+	+	+	+	+	+	+	-	-	+	-	-	not determinedn.d.
[Ref.: #9202]	26804	+	-	-	-	+	+	-	+	+	+	+	+	+	+	+	-	-	+	-	-	not determinedn.d.
[Ref.: #9202]	26805	-	-	-	-	+/-	+	-	+	+	+	+	+	+	+	+	-	-	+	-	-	not determinedn.d.
[Ref.: #9202]	26806	-	-	-	-	+	+	-	+	+	+	+	+	+	+	+	-	-	+	-	-	not determinedn.d.
[Ref.: #9202]	26807	-	-	-	-	+	+	-	+	+	+	+	+	+	+	+	-	-	+	-	-	not determinedn.d.
[Ref.: #9202]	26808	+	-	-	-	+	+	-	+	+	+	+	+	+	+	+	-	-	+	-	-	not determinedn.d.
[Ref.: #9202]	26809	+	-	-	-	+	+	-	+	+	+	+	+	+	+	+	-	-	+	-	-	not determinedn.d.
[Ref.: #9202]	26810	+	-	-	-	+	+	-	+	+	+	+	+	+	+	+	-	-	+	-	-	+
[Ref.: #9202]	27245	+	-	-	-	+/-	+	-	+	+	+	+	+	+	+	+	-	-	+	-	-	+
[Ref.: #44253]	8706	+	-	-	-	+	+	-	+	+	+	+	+	+	+	+	-	-	+	-	-	+

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122121]	3234	not determinedn.d.	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	-	+	-	-	-	-	-	-	+	+	+	+	-	-	+	+	+	+	-	+	+	-	+	+	+	-	-	-	-	-	-	+	-	+	-	+	-	-	-	+	+	+	-	-	+	-	+	-	-	+	+	+	-	+	+	-	+	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #44253]	4558	-	-	+	+	-	+	-	-	-	-	+	-	-	-	-	+	+	+	-	-
[Ref.: #44253]	4559	-	+	+	-	-	+	-	-	+	-	+	+	-	-	-	+	+	+	-	-
[Ref.: #122121]	13118	-	+	+	-	-	+	-	-	-	-	+	+	-	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9202]	Sample type/isolated from	Malus sp., crown gall of apple seedling
[Ref.: #9202]	Host species	Malus

[Ref.: #44253]	Sample type/isolated from	Apple tree,tumour,'crown gall'

[Ref.: #67770]	Sample type/isolated from	Apple seedling crown gall
[Ref.: #67770]	Geographic location (country and/or sea, region)	IA
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America

[Ref.: #122121]	Sample type/isolated from	Plant, Apple tree, Crown gall
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	-
#Infection	#Plant infections	#Gall

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB681869 (>99% sequence identity) for Agrobacterium from Microbeatlas

Aquatic Samples	822
Soil Samples	595
Animal Samples	3746
Plant Samples	731
Total Samples	5894

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9202]	Pathogenicity (human)	yes, in single cases
[Ref.: #9202]	Pathogenicity (plant)	yes
[Ref.: #9202]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122121]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Agrobacterium tumefaciens gene for 16S rRNA, strain: IAM 13129	D12784	1438	GenBank ENA	358 tax ID
[Ref.: #20218]	Agrobacterium tumefaciens strain DSM 30205 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA, partial sequence	AF345274	1087	GenBank ENA	358 tax ID	*
[Ref.: #20218]	Agrobacterium tumefaciens gene for 16S rRNA, partial sequence, strain: NBRC 102589	AB681869	1410	GenBank ENA	358 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Agrobacterium tumefaciens NCTC13543	GCA_900455815	contig	GenBank ENA	358 tax ID
[Ref.: #66792]	Agrobacterium tumefaciens strain NCTC13543	358.254	wgs	PATRIC	358 tax ID	*

[Ref.: #9202]

GC-content

60.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Agrobacterium tumefaciens strain NCTC13543 PATRIC: 358.254
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Agrobacterium tumefaciens strain NCTC13543 PATRIC: 358.254
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.333	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.075	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	94.63	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	82.851	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	99.25	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	67.401	no

Availability in culture collections External links

[Ref.: #9202]

Culture collection no.

DSM 30205, ATCC 23308, CCM 1040, CIP B6, DSM 60574, ICPB TT 3, NBRC 102589, NCPPB 397, CCUG 725, CIP 67.1, LMG 187, IAM 13129, JCM 20845, CCEB 758, HAMBI 1811, ICMP 5856, ICPB TT3, LMG 28, NCPPB 2437, NCTC 13543

[Ref.: #82771]

SI-ID 419

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Purification and characterization of seven bioactive compounds from the newly isolated Streptomyces cavourensis TN638 strain via solid-state fermentation.	Kaaniche F, Hamed A, Elleuch L, Chakchouk-Mtibaa A, Smaoui S, Karray-Rebai I, Koubaa I, Arcile G, Allouche N, Mellouli L	Microb Pathog	10.1016/j.micpath.2020.104106	2020	*
Pathogenicity	Chemical Composition and in vivo Efficacy of the Essential Oil of Mentha piperita L. in the Suppression of Crown Gall Disease on Tomato Plants.	Hsouna AB, Touj N, Hammami I, Dridi K, Al-Ayed AS, Hamdi N	J Oleo Sci	10.5650/jos.ess18261	2019	*
Phylogeny	Characterization of copper-resistant agrobacterium isolated from legume nodule in mining tailings.	Yu J, Fan L, Yang S, Tang M, Yang W, Li H, Wei G	Bull Environ Contam Toxicol	10.1007/s00128-008-9598-z	2008	*
Phylogeny	Endophytic occupation of root nodules and roots of Melilotus dentatus by Agrobacterium tumefaciens.	Wang LL, Wang ET, Liu J, Li Y, Chen WX	Microb Ecol	10.1007/s00248-006-9116-y	2006	*
Metabolism	Structural determination of the O-chain polysaccharide from Agrobacterium tumefaciens, strain DSM 30205.	De Castro C, De Castro O, Molinaro A, Parrilli M	Eur J Biochem	10.1046/j.1432-1033.2002.02955.x	2002	*
Phylogeny	Rhizobium pusense sp. nov., isolated from the rhizosphere of chickpea (Cicer arietinum L.).	Panday D, Schumann P, Das SK	Int J Syst Evol Microbiol	10.1099/ijs.0.028407-0	2010	*

References

#9202

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30205

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#36619 ; Curators of the CIP;
#44253 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 725

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82771

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID419.1 )

#122121 Collection of Institut Pasteur ; Curators of the CIP; CIP 67.1
* These data were automatically processed and therefore are not curated

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Agrobacterium tumefaciens strain NCTC13543

Agrobacterium tumefaciens strain NCTC13543

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