Agrobacterium radiobacter (CIP 104327, ATCC 6466, IFO 13127)

Name: Agrobacterium radiobacter (CIP 104327, ATCC 6466, IFO 13127)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 136296

Type strain

Culture col. no. CIP 104327 ATCC 6466 IFO 13127 NCIMB 8149 NBRC 12665 5 more

NCBI tax ID(s) 362

Special Collections JCM CIP

History JCM <-- IAM 1527 <-- ATCC 6466 <-- N. R. Smith NRS 36 ("Achromobacter radiobacter") <-- F. Lohnis. CIP <- 1995, ATCC, Agrobacterium tumefaciens <- N.R. Smith: strain NRS 36, Achromobacter radiobacter <- Lohnis

Links

Agrobacterium radiobacter CIP 104327 is an obligate aerobe, Gram-negative, motile bacterium that was isolated from Soil.

Gram-negative motile rod-shaped obligate aerobe Bacteria

Name and taxonomic classification

SI-ID 421

LMG 142,ATCC 6466,CCM 1043,IAM 1527,IFO 13127,NCIB 8149,CIP 104327,NCIMB 8149,IFO12665,CECT 4362,CCRC 11366,NBRC 12665,NCIM 2443,JCM 20200

@ref 20215

Last LPSN update 2026-05-29 08:38:46

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Rhizobiaceae

Genus Agrobacterium

Species Agrobacterium radiobacter

Full scientific name Agrobacterium radiobacter (Beijerinck and van Delden 1902) Conn 1942 (Approved Lists 1980)

Synonyms (3)

Beijerinckia fluminensis
"Bacillus radiobacter"
Rhizobium radiobacter

BacDive ID	Other strains from **Agrobacterium radiobacter** (56)	Type strain
13580	A. radiobacter DSM 30147, ATCC 19358, IFO 13532, NBRC 13532, ... (type strain)
13581	A. radiobacter A 1, CCUG 3355, DSM 30150, ATCC 4720, CCM ... (type strain)
13576	A. radiobacter AK205, DSM 7215
13577	A. radiobacter d3I, DSM 9674
13579	A. radiobacter DSM 13874, NCPPB 4043
13582	A. radiobacter M 2/1, DSM 30199, DSM 60577, JCM 20987, IAM ...
13584	A. radiobacter B 6, B6, DSM 30205, ATCC 23308, CCM 1040, ...
13585	A. radiobacter F/1, DSM 30206, DSM 60575
13586	A. radiobacter 3/1, DSM 30207, DSM 60576
13587	A. radiobacter H-100, DSM 30208, DSM 60579, NCPPB 3837, ...
13589	A. radiobacter DSM 2108, CRIPP D57
24476	A. radiobacter DSM 2327, UQM 1685, CCUG 53676, CIP 106281, ...
24823	A. radiobacter GV3101(pMP90), DSM 12364
134748	A. radiobacter B6 Tr, CIP 74.29
134990	A. radiobacter CIP 102835
136689	A. radiobacter 90A, CIP 107749, CCUG 51326
137356	A. radiobacter B62, CIP 104334, ATCC 11157
137357	A. radiobacter TT134, 6-1-2, CIP 104336, ATCC 15955
137527	A. radiobacter 500, CIP 70.51, ATCC 17983
137660	A. radiobacter 81.83, CIP 100088
137664	A. radiobacter C58, CIP 104333, ATCC 33970
137832	A. radiobacter CIP 101091
137982	A. radiobacter 358-86, CIP 102371
139082	A. radiobacter CIP 104326, ATCC 4718, JCM 20199, IAM 1526, ...
139214	A. radiobacter 572-85, CIP 101768
141516	A. radiobacter CCUG 2516, NRRL B-181
141594	A. radiobacter CCUG 3370
142441	A. radiobacter CCUG 12508
142442	A. radiobacter CCUG 12509, LMG 385
143154	A. radiobacter CCUG 17511
145747	A. radiobacter CCUG 29471
146695	A. radiobacter CCUG 31962
146956	A. radiobacter CCUG 32540
146960	A. radiobacter CCUG 32544
147074	A. radiobacter CCUG 32799
147077	A. radiobacter CCUG 32804
147384	A. radiobacter CCUG 33502
147440	A. radiobacter CCUG 33585
150676	A. radiobacter CCUG 41940
150928	A. radiobacter CCUG 42766
152911	A. radiobacter CCUG 47961
153141	A. radiobacter CCUG 48560
153176	A. radiobacter CCUG 48648
153197	A. radiobacter CCUG 48700 B
153447	A. radiobacter CCUG 49619
153627	A. radiobacter CCUG 50385 B
157291	A. radiobacter IMI 347314
157292	A. radiobacter IMI 350781
157293	A. radiobacter IMI 347313
157294	A. radiobacter IMI 347316
157295	A. radiobacter IMI 347322
157296	A. radiobacter IMI 347323
157297	A. radiobacter IMI 347324
157298	A. radiobacter IMI 347312
157514	A. radiobacter IMI 389299
157515	A. radiobacter IMI 505624a

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
35658	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
35658	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
35658	CIP Medium 3			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
35658	positive	growth	30
35658	negative	growth	5
35658	negative	growth	10
35658	negative	growth	41
67770	positive	growth	25

Physiology and metabolism

Oxygen tolerance

35658

Oxygen toleranceobligate aerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
35658	4853 ChEBI	esculin	+	hydrolysis
35658	17234 ChEBI	glucose	+	degradation
35658	17632 ChEBI	nitrate	-	reduction
35658	16301 ChEBI	nitrite	-	reduction
35658	132112 ChEBI	sodium thiosulfate	+	builds gas from

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
35658	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
35658	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
35658	alcohol dehydrogenase	-	1.1.1.1
35658	amylase	-
35658	beta-galactosidase	+	3.2.1.23
35658	caseinase	-	3.4.21.50
35658	catalase	+	1.11.1.6
35658	DNase	-
35658	gelatinase	-
35658	lecithinase	-
35658	lysine decarboxylase	-	4.1.1.18
35658	ornithine decarboxylase	-	4.1.1.17
35658	oxidase	+
35658	tween esterase	+
35658	urease	+	3.5.1.5

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
35658	not determinedn.d.	+	+	+	+	+	-	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	-	+	-	+	-	-	-	-	-	-	+	+	+	+	-	-	+	+	+	-	-	+	+	-	+	+	+	+	-	-	-	-	+	-	-	+	-	+	-	-	-	+	+	-	-	-	-	-	+	-	+	+	+	+	-	+	+	-	+	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Soil	Netherlands	NLD	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
35658	1	Risk group (French classification)

Sequence information

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Articulating the exuberant intricacies of bacterial exopolysaccharides to purge environmental pollutants.	Mehta K, Shukla A, Saraf M.	Heliyon	10.1016/j.heliyon.2021.e08446	2021
	Valorization of date palm (Phoenix dactylifera) fruit processing by-products and wastes using bioprocess technology - Review.	Chandrasekaran M, Bahkali AH.	Saudi J Biol Sci	10.1016/j.sjbs.2012.12.004	2013
Metabolism	Microbial oxidation and utilization of orthophosphite during growth.	CASIDA LE.	J Bacteriol	10.1128/jb.80.2.237-241.1960	1960
	OCCURRENCE OF ORNITHINE delta-TRANSAMINASE: A DICHOTOMY.	Scher WI, Vogel HJ.	Proc Natl Acad Sci U S A	10.1073/pnas.43.9.796	1957
Enzymology	Distribution of aldoxime dehydratase in microorganisms.	Kato Y, Ooi R, Asano Y.	Appl Environ Microbiol	10.1128/aem.66.6.2290-2296.2000	2000

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#35658	Collection of Institut Pasteur ; Curators of the CIP; CIP 104327
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Agrobacterium radiobacter (CIP 104327, ATCC 6466, IFO 13127)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

API biotype100

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome-based predictions

Literature

Literature

References

BacDive

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