Agrobacterium radiobacter (DSM 30207, DSM 60576, 3/1)

Name: Agrobacterium radiobacter (DSM 30207, DSM 60576, 3/1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13586

Type strain

Strain Designation 3/1

Culture col. no. DSM 30207 DSM 60576 3/1

NCBI tax ID(s) 362

Special Collections DSMZ

History <- DSM 60576 <- J. De Ley <- D. Zutra, 3/1 (Agrobacterium tumefaciens)

Links

Agrobacterium radiobacter 3/1 is a plant pathogen that was isolated from Malus sp..

plant pathogen Bacteria

Name and taxonomic classification

SI-ID 560

LMG 198,DSM 30207,DSM 60576,CFBP 6999

@ref 20215

Last LPSN update 2026-02-09 11:21:11

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Rhizobiaceae

Genus Agrobacterium

Species Agrobacterium radiobacter

Full scientific name Agrobacterium radiobacter (Beijerinck and van Delden 1902) Conn 1942 (Approved Lists 1980)

Synonyms (3)

"Bacillus radiobacter"
Rhizobium radiobacter
Beijerinckia fluminensis

BacDive ID	Other strains from **Agrobacterium radiobacter** (59)	Type strain
13580	A. radiobacter DSM 30147, ATCC 19358, IFO 13532, NBRC 13532, ... (type strain)
13581	A. radiobacter A 1, CCUG 3355, DSM 30150, ATCC 4720, CCM ... (type strain)
13576	A. radiobacter AK205, DSM 7215
13577	A. radiobacter d3I, DSM 9674
13579	A. radiobacter DSM 13874, NCPPB 4043
13582	A. radiobacter M 2/1, DSM 30199, DSM 60577, JCM 20987, IAM ...
13584	A. radiobacter B 6, B6, DSM 30205, ATCC 23308, CCM 1040, ...
13585	A. radiobacter F/1, DSM 30206, DSM 60575
13587	A. radiobacter H-100, DSM 30208, DSM 60579, NCPPB 3837, ...
13589	A. radiobacter DSM 2108, CRIPP D57
100184	A. radiobacter ST032833(HKI), E008,
100185	A. radiobacter ST033150(HKI),
100186	A. radiobacter ST032607(HKI), F114a,
24476	A. radiobacter DSM 2327, UQM 1685, CCUG 53676, CIP 106281, ...
24823	A. radiobacter GV3101(pMP90), DSM 12364
134748	A. radiobacter B6 Tr, CIP 74.29
134990	A. radiobacter CIP 102835
136296	A. radiobacter CIP 104327, ATCC 6466, IFO 13127, JCM 20200, ...
136689	A. radiobacter 90A, CIP 107749, CCUG 51326
137356	A. radiobacter B62, CIP 104334, ATCC 11157
137357	A. radiobacter TT134, 6-1-2, CIP 104336, ATCC 15955
137527	A. radiobacter 500, CIP 70.51, ATCC 17983
137660	A. radiobacter 81.83, CIP 100088
137664	A. radiobacter C58, CIP 104333, ATCC 33970
137832	A. radiobacter CIP 101091
137982	A. radiobacter 358-86, CIP 102371
139082	A. radiobacter CIP 104326, ATCC 4718, JCM 20199, IAM 1526, ...
139214	A. radiobacter 572-85, CIP 101768
141516	A. radiobacter CCUG 2516, NRRL B-181
141594	A. radiobacter CCUG 3370
142441	A. radiobacter CCUG 12508
142442	A. radiobacter CCUG 12509, LMG 385
143154	A. radiobacter CCUG 17511
145747	A. radiobacter CCUG 29471
146695	A. radiobacter CCUG 31962
146956	A. radiobacter CCUG 32540
146960	A. radiobacter CCUG 32544
147074	A. radiobacter CCUG 32799
147077	A. radiobacter CCUG 32804
147384	A. radiobacter CCUG 33502
147440	A. radiobacter CCUG 33585
150676	A. radiobacter CCUG 41940
150928	A. radiobacter CCUG 42766
152911	A. radiobacter CCUG 47961
153141	A. radiobacter CCUG 48560
153176	A. radiobacter CCUG 48648
153197	A. radiobacter CCUG 48700 B
153447	A. radiobacter CCUG 49619
153627	A. radiobacter CCUG 50385 B
157291	A. radiobacter IMI 347314
157292	A. radiobacter IMI 350781
157293	A. radiobacter IMI 347313
157294	A. radiobacter IMI 347316
157295	A. radiobacter IMI 347322
157296	A. radiobacter IMI 347323
157297	A. radiobacter IMI 347324
157298	A. radiobacter IMI 347312
157514	A. radiobacter IMI 389299
157515	A. radiobacter IMI 505624a

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9204	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
9204	positive	growth	26

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68368	17634 ChEBI	D-glucose	-	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	-	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68368	17632 ChEBI	nitrate	+	reduction	from API 20E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	17997 ChEBI	dinitrogen	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E
68368	16301 ChEBI	nitrite	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	+	4.1.99.1	from API 20E
68368	urease	+	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
9204	+	-	-	-	+/-	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
9204	Malus sp.	Malus	Israel	ISR	Asia

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity plant	Biosafety level	Biosafety level comment
9204	yes, in single cases		1	Risk group (German classification) According to TRBA 466

Sequence information

GC content

9204

GC-content (mol%)61.6

Genome-based predictions

Literature

References

#9204	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30207
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#68368	Automatically annotated from API 20E .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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