Name: Agrobacterium radiobacter TT134
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 137357

Type strain:

Species: Agrobacterium radiobacter

Strain Designation: TT134, 6-1-2

Culture col. no.: CIP 104336, ATCC 15955

Strain history: CIP <- 1995, ATCC, Agrobacterium tumefaciens <- M.P. Starr: strain TT134 <- J. De Vay: strain 6-1-2

NCBI tax ID(s): 362 (species)

SI-ID 592

LMG 235, ATCC 15955, CIP 104336, CECT 472

Special Collections

Other strains from Agrobacterium radiobacter

Section

When using BacDive for research please cite our paper

Agrobacterium radiobacter TT134 is a mesophilic, Gram-negative bacterium of the family Rhizobiaceae.

Gram-negative
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Agrobacterium*
	Species	**Agrobacterium radiobacter**
	Full Scientific Name (LPSN)	Agrobacterium radiobacter (Beijerinck and van Delden 1902) Conn 1942 (Approved Lists 1980)

	Synonym	Rhizobium radiobacter
	Synonym	Beijerinckia fluminensis
	Synonym	"Bacillus* radiobacter"*

Information on morphological and physiological properties Morphology

[Ref.: #37365]	Gram stain	negative
[Ref.: #125439]	Gram stain	negative Confidence in %99.8
[Ref.: #125438]	Gram stain	negative Confidence in %98.333

[Ref.: #37365]	Cell shape	rod-shaped

[Ref.: #37365]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #37365]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #37365]

Culture medium growth

[Ref.: #37365]

Culture medium composition

expand / minimize

[Ref.: #37365]

Culture medium

CIP Medium 3

[Ref.: #37365]

Culture medium growth

[Ref.: #37365]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #37365]		growth	30 °C
[Ref.: #37365]	no	growth	5 °C
[Ref.: #37365]	no	growth	10 °C
[Ref.: #37365]	no	growth	41 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

aerobe Confidence in %92.2

[Ref.: #125439]	Ability of spore formation	no Confidence in %99
[Ref.: #125438]	Ability of spore formation	no Confidence in %92.321

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #37365]	esculin ChEBI	+	hydrolysis
[Ref.: #37365]	nitrate ChEBI	-	reduction
[Ref.: #37365]	nitrate ChEBI	-	respiration
[Ref.: #37365]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #37365]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #37365]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #37365]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #37365]	amylase	-
[Ref.: #37365]	beta-galactosidase	+	3.2.1.23
[Ref.: #37365]	caseinase	-	3.4.21.50
[Ref.: #37365]	catalase	+	1.11.1.6
[Ref.: #37365]	DNase	-
[Ref.: #37365]	gelatinase	-
[Ref.: #37365]	lecithinase	-
[Ref.: #37365]	lysine decarboxylase	-	4.1.1.18
[Ref.: #37365]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #37365]	oxidase	+
[Ref.: #37365]	tween esterase	-
[Ref.: #37365]	urease	+	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #37365]	640	not determinedn.d.	+	+	+	+	+	-	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	-	+	-	-	+	-	-	-	+	+	+	+	-	-	+	+	+	+	-	+	+	-	+	+	+	-	-	-	-	-	+	+	-	+	-	+	-	-	-	+	+	-	-	-	-	-	+	-	+	+	+	+	-	+	+	-	-	-	-

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #37365]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Agrobacterium tumefaciens ATCC 15955	GCA_013318185	scaffold	GenBank ENA	358 tax ID	*
[Ref.: #66792]	Agrobacterium tumefaciens strain ATCC 15955	358.373	wgs	PATRIC	358 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Agrobacterium tumefaciens ATCC 15955 NCBI: GCA_013318185.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	98.333	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	94.206	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	86.607	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	92.321	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	99.75	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	67.85	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Agrobacterium tumefaciens ATCC 15955 NCBI: GCA_013318185
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	99
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	65.8
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.8
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	aerobe	92.2

Availability in culture collections External links

[Ref.: #37365]

Culture collection no.

CIP 104336, ATCC 15955

[Ref.: #94278]

SI-ID 592

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Metabolism	Growth of Agrobacterium tumefaciens under octopine limitation in chemostats.	Bell CR	Appl Environ Microbiol	10.1128/aem.56.6.1775-1781.1990	1990	*
	First Report of Agrobacterium rubi and A. rhizogenes Causing Crown and Root Gall and Hairy Root on Blueberry in Argentina.	Alippi AM, Lopez AC, Balatti PA	Plant Dis	10.1094/PDIS-94-8-1064C	2010	*
	Competition of Octopine-Catabolizing Pseudomonas spp. and Octopine-Type Agrobacterium tumefaciens for Octopine in Chemostats.	Bell CR, Cummings NE, Canfield ML, Moore LW	Appl Environ Microbiol	10.1128/aem.56.9.2840-2846.1990	1990	*
	Growth of Octopine-Catabolizing Pseudomonas spp. under Octopine Limitation in Chemostats and Their Potential To Compete with Agrobacterium tumefaciens.	Bell CR, Moore LW, Canfield ML	Appl Environ Microbiol	10.1128/aem.56.9.2834-2839.1990	1990	*
	Potential of Agrobacterium tumefaciens and Octopine-Utilizing Fluorescent Pseudomonas Strains To Attach to Susceptible Potato Tissues.	Chan JW, Ramey WD, Moore LW, Bell CR	Appl Environ Microbiol	10.1128/aem.56.9.2826-2833.1990	1990	*
	Stimulation of Agrobacterium tumefaciens Growth by Azotobacter vinelandii Ferrisiderophores.	Page WJ, Dale PL	Appl Environ Microbiol	10.1128/aem.51.2.451-454.1986	1986	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#37365 Collection of Institut Pasteur ; Curators of the CIP; CIP 104336

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#94278

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID592.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Agrobacterium radiobacter in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Agrobacterium tumefaciens ATCC 15955

Agrobacterium tumefaciens ATCC 15955

Change proposal

Change proposal