Agrobacterium radiobacter (CIP 104336, ATCC 15955, TT134)

Name: Agrobacterium radiobacter (CIP 104336, ATCC 15955, TT134)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 137357

Type strain

Strain Designation TT134, 6-1-2

Culture col. no. CIP 104336 ATCC 15955 TT134 6-1-2

NCBI tax ID(s) 362

Special Collections CIP

History CIP <- 1995, ATCC, Agrobacterium tumefaciens <- M.P. Starr: strain TT134 <- J. De Vay: strain 6-1-2

Links

Agrobacterium radiobacter TT134 is a Gram-negative, motile, rod-shaped bacterium of the family Rhizobiaceae.

Gram-negative motile rod-shaped genome sequence Bacteria

Name and taxonomic classification

SI-ID 592

LMG 235,ATCC 15955,CIP 104336,CECT 472

@ref 20215

Last LPSN update 2026-05-29 08:39:01

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Rhizobiaceae

Genus Agrobacterium

Species Agrobacterium radiobacter

Full scientific name Agrobacterium radiobacter (Beijerinck and van Delden 1902) Conn 1942 (Approved Lists 1980)

Synonyms (3)

Beijerinckia fluminensis
"Bacillus radiobacter"
Rhizobium radiobacter

BacDive ID	Other strains from **Agrobacterium radiobacter** (56)	Type strain
13580	A. radiobacter DSM 30147, ATCC 19358, IFO 13532, NBRC 13532, ... (type strain)
13581	A. radiobacter A 1, CCUG 3355, DSM 30150, ATCC 4720, CCM ... (type strain)
13576	A. radiobacter AK205, DSM 7215
13577	A. radiobacter d3I, DSM 9674
13579	A. radiobacter DSM 13874, NCPPB 4043
13582	A. radiobacter M 2/1, DSM 30199, DSM 60577, JCM 20987, IAM ...
13584	A. radiobacter B 6, B6, DSM 30205, ATCC 23308, CCM 1040, ...
13585	A. radiobacter F/1, DSM 30206, DSM 60575
13586	A. radiobacter 3/1, DSM 30207, DSM 60576
13587	A. radiobacter H-100, DSM 30208, DSM 60579, NCPPB 3837, ...
13589	A. radiobacter DSM 2108, CRIPP D57
24476	A. radiobacter DSM 2327, UQM 1685, CCUG 53676, CIP 106281, ...
24823	A. radiobacter GV3101(pMP90), DSM 12364
134748	A. radiobacter B6 Tr, CIP 74.29
134990	A. radiobacter CIP 102835
136296	A. radiobacter CIP 104327, ATCC 6466, IFO 13127, JCM 20200, ...
136689	A. radiobacter 90A, CIP 107749, CCUG 51326
137356	A. radiobacter B62, CIP 104334, ATCC 11157
137527	A. radiobacter 500, CIP 70.51, ATCC 17983
137660	A. radiobacter 81.83, CIP 100088
137664	A. radiobacter C58, CIP 104333, ATCC 33970
137832	A. radiobacter CIP 101091
137982	A. radiobacter 358-86, CIP 102371
139082	A. radiobacter CIP 104326, ATCC 4718, JCM 20199, IAM 1526, ...
139214	A. radiobacter 572-85, CIP 101768
141516	A. radiobacter CCUG 2516, NRRL B-181
141594	A. radiobacter CCUG 3370
142441	A. radiobacter CCUG 12508
142442	A. radiobacter CCUG 12509, LMG 385
143154	A. radiobacter CCUG 17511
145747	A. radiobacter CCUG 29471
146695	A. radiobacter CCUG 31962
146956	A. radiobacter CCUG 32540
146960	A. radiobacter CCUG 32544
147074	A. radiobacter CCUG 32799
147077	A. radiobacter CCUG 32804
147384	A. radiobacter CCUG 33502
147440	A. radiobacter CCUG 33585
150676	A. radiobacter CCUG 41940
150928	A. radiobacter CCUG 42766
152911	A. radiobacter CCUG 47961
153141	A. radiobacter CCUG 48560
153176	A. radiobacter CCUG 48648
153197	A. radiobacter CCUG 48700 B
153447	A. radiobacter CCUG 49619
153627	A. radiobacter CCUG 50385 B
157291	A. radiobacter IMI 347314
157292	A. radiobacter IMI 350781
157293	A. radiobacter IMI 347313
157294	A. radiobacter IMI 347316
157295	A. radiobacter IMI 347322
157296	A. radiobacter IMI 347323
157297	A. radiobacter IMI 347324
157298	A. radiobacter IMI 347312
157514	A. radiobacter IMI 389299
157515	A. radiobacter IMI 505624a

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
37365	negative	rod-shaped
125439	negative		99.296
125438	negative		98.333

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
37365	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
37365	CIP Medium 3			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
37365	positive	growth	30
37365	negative	growth	5
37365	negative	growth	10
37365	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.472

Spore formation

@ref	Spore formation	Confidence
125439		99.721
125438		92.321

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
37365	4853 ChEBI	esculin	+	hydrolysis
37365	17632 ChEBI	nitrate	-	reduction
37365	17632 ChEBI	nitrate	-	respiration
37365	16301 ChEBI	nitrite	-	reduction

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
37365	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
37365	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
37365	alcohol dehydrogenase	-	1.1.1.1
37365	amylase	-
37365	beta-galactosidase	+	3.2.1.23
37365	caseinase	-	3.4.21.50
37365	catalase	+	1.11.1.6
37365	DNase	-
37365	gelatinase	-
37365	lecithinase	-
37365	lysine decarboxylase	-	4.1.1.18
37365	ornithine decarboxylase	-	4.1.1.17
37365	oxidase	+
37365	tween esterase	-
37365	urease	+	3.5.1.5

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
37365	not determinedn.d.	+	+	+	+	+	-	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	-	+	-	-	+	-	-	-	+	+	+	+	-	-	+	+	+	+	-	+	+	-	+	+	+	-	-	-	-	-	+	+	-	+	-	+	-	-	-	+	+	-	-	-	-	-	+	-	+	+	+	+	-	+	+	-	-	-	-

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
37365	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1331818v1 assembly for Agrobacterium tumefaciens ATCC 15955	scaffold	GCA_013318185	358.373	358	64.24

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1331818v1 assembly for Agrobacterium tumefaciens ATCC 15955
BV-BRC: 358.373

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.47	no
125439	gram_stain	BacteriaNetⓘ	negative	99.30	no
125439	motility	BacteriaNetⓘ	yes	55.71	no
125439	spore_formation	BacteriaNetⓘ	no	99.72	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Agrobacterium tumefaciens ATCC 15955
NCBI: GCA_013318185.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.33	no
125438	anaerobic	anaerobicⓘ	no	94.21	no
125438	aerobic	aerobicⓘ	yes	86.61	no
125438	spore-forming	spore-formingⓘ	no	92.32	no
125438	thermophilic	thermophileⓘ	no	99.75	yes
125438	flagellated	motile2+ⓘ	yes	67.85	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Recovery of a strain of Agrobacterium radiobacter with a mucoid phenotype from an immunocompromised child with bacteremia.	Dunne WM, Tillman J, Murray JC.	J Clin Microbiol	10.1128/jcm.31.9.2541-2543.1993	1993
Enzymology	Rapid procedure for detection and isolation of large and small plasmids.	Kado CI, Liu ST.	J Bacteriol	10.1128/jb.145.3.1365-1373.1981	1981
	First Report of Agrobacterium rubi and A. rhizogenes Causing Crown and Root Gall and Hairy Root on Blueberry in Argentina.	Alippi AM, Lopez AC, Balatti PA	Plant Dis	10.1094/PDIS-94-8-1064C	2010
	Competition of Octopine-Catabolizing Pseudomonas spp. and Octopine-Type Agrobacterium tumefaciens for Octopine in Chemostats.	Bell CR, Cummings NE, Canfield ML, Moore LW	Appl Environ Microbiol	10.1128/aem.56.9.2840-2846.1990	1990
	Growth of Octopine-Catabolizing Pseudomonas spp. under Octopine Limitation in Chemostats and Their Potential To Compete with Agrobacterium tumefaciens.	Bell CR, Moore LW, Canfield ML	Appl Environ Microbiol	10.1128/aem.56.9.2834-2839.1990	1990
	Potential of Agrobacterium tumefaciens and Octopine-Utilizing Fluorescent Pseudomonas Strains To Attach to Susceptible Potato Tissues.	Chan JW, Ramey WD, Moore LW, Bell CR	Appl Environ Microbiol	10.1128/aem.56.9.2826-2833.1990	1990
Metabolism	Growth of Agrobacterium tumefaciens under octopine limitation in chemostats.	Bell CR	Appl Environ Microbiol	10.1128/aem.56.6.1775-1781.1990	1990
	Stimulation of Agrobacterium tumefaciens Growth by Azotobacter vinelandii Ferrisiderophores.	Page WJ, Dale PL	Appl Environ Microbiol	10.1128/aem.51.2.451-454.1986	1986

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#37365	Collection of Institut Pasteur ; Curators of the CIP; CIP 104336
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Agrobacterium radiobacter (CIP 104336, ATCC 15955, TT134)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

API biotype100

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_013318185

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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