Ligilactobacillus salivarius (DSM 103789, WCA-389-WT-5E)

Name: Ligilactobacillus salivarius (DSM 103789, WCA-389-WT-5E)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159530

Type strain

Strain Designation WCA-389-WT-5E

Culture col. no. DSM 103789 WCA-389-WT-5E

NCBI tax ID(s) 1624

Special Collections DSMZ Pig DZIF

Links

Ligilactobacillus salivarius WCA-389-WT-5E is a mesophilic prokaryote that was isolated from feces; pig, 3.5 month old, wild type.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 400841

DSM 103789

@ref 20215

Last LPSN update 2025-12-16 10:08:17

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Ligilactobacillus

Species Ligilactobacillus salivarius

Full scientific name Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020

Synonyms (2)

Lactobacillus salivarius
Lactobacillus salivarius subsp. salicinius

BacDive ID	Other strains from **Ligilactobacillus salivarius** (22)	Type strain
6665	L. salivarius H066, HO 66, CCUG 31453, LMG 9477, DSM 20555, ... (type strain)
6663	L. salivarius HO-128X, DSM 20492
6664	L. salivarius HO268, HO 268, DSM 20554, ATCC 11742, NCDO ...
158986	L. salivarius WCA-383-APC-5E, DSM 105842
160645	L. salivarius Cla-CZ-11, DSM 108969
160944	L. salivarius JCM 1040
160950	L. salivarius JCM 1042
160955	L. salivarius JCM 1044
160956	L. salivarius JCM 1045
160959	L. salivarius JCM 1046, KCTC 3156
160960	L. salivarius JCM 1047, KCTC 3157
161212	L. salivarius JCM 1230
165562	L. salivarius JCM 7691
165569	L. salivarius JCM 7706
165574	L. salivarius JCM 7712
165578	L. salivarius JCM 7723
165903	L. salivarius JCM 8662
165904	L. salivarius JCM 8663
165905	L. salivarius JCM 8664
165906	L. salivarius JCM 8665
165933	L. salivarius JCM 8699
165934	L. salivarius JCM 8701

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	91.428

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66356	MRS MEDIUM (DSMZ Medium 11)		Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
66356	WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)		Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66356	positive	growth	37	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
66356	feces; pig, 3.5 month old, wild type	Kranzberg (Bavaria)	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence MN537462 (>99% sequence identity) for Ligilactobacillus salivarius from Microbeatlas

Aquatic Samples	3859
Soil Samples	1629
Animal Samples	69457
Plant Samples	834
Total Samples	75779

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
66356	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1284361v1 assembly for Ligilactobacillus salivarius WCA-389-WT-5E	contig	GCA_012843615	1624.466	1624	58.29

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66356	Ligilactobacillus salivarius strain DSM 103789 16S ribosomal RNA gene, partial sequence	MN537462	1513		1624

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Ligilactobacillus salivarius WCA-389-WT-5E
NCBI: GCA_012843615.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.43	no
125438	anaerobic	anaerobicⓘ	no	77.16	no
125438	aerobic	aerobicⓘ	no	95.58	no
125438	spore-forming	spore-formingⓘ	no	87.81	no
125438	thermophilic	thermophileⓘ	no	95.00	no
125438	flagellated	motile2+ⓘ	no	89.00	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66356	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103789
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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