Alistipes shahii (DSM 107272, BL-389-WT-23F)

Name: Alistipes shahii (DSM 107272, BL-389-WT-23F)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159529

Type strain

Strain Designation BL-389-WT-23F

Culture col. no. DSM 107272 BL-389-WT-23F

NCBI tax ID(s) 328814

Special Collections DSMZ Pig DZIF

History DSMZ <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; BL-389-WT-23F

Links

Alistipes shahii BL-389-WT-23F is a bacterium that was isolated from feces; pig, 8 weeks old, wild type.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 404995

DSM 107272

@ref 20215

Last LPSN update 2026-05-29 08:44:13

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Rikenellaceae

Genus Alistipes

Species Alistipes shahii

Full scientific name Alistipes shahii Song et al. 2006

BacDive ID	Other strains from **Alistipes shahii** (1)	Type strain
14032	A. shahii DSM 19121, ATCC BAA-1179, CCUG 48947, KCTC ... (type strain)

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		91.944
125438		97.091	negative

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66355	GAM Broth (Gifu Anaerobic Medium Broth) (DSMZ Medium 1713)		Medium recipe at MediaDive	Name: GAM Broth (Gifu Anaerobic Medium Broth) (DSMZ Medium 1713) Composition: GAM Broth powder 59.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
66355	positive	growth	37

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		95.517

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	+	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
68380	alkaline phosphatase	+	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glutamate decarboxylase	+	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	+		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	+	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
66355	-	-	+	+	-	+/-	+/-	-	-	+	-	-	+	+/-	-	-	+	-	-	+	-	-	-	-	+	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
66355	feces; pig, 8 weeks old, wild type	Kranzberg (Bavaria)	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence MN537530 (>99% sequence identity) for Alistipes shahii subclade from Microbeatlas

Aquatic Samples	3715
Soil Samples	1190
Animal Samples	187778
Plant Samples	375
Total Samples	193058

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
66355	yes, in single cases	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1284420v1 assembly for Alistipes shahii BL-389-WT-23F	contig	GCA_012844205	328814.952	328814	63.8

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66355	Alistipes shahii strain DSM 107272 16S ribosomal RNA gene, partial sequence	MN537530	1457		328814

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alistipes shahii BL-389-WT-23F
NCBI: GCA_012844205.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.09	no
125438	anaerobic	anaerobicⓘ	yes	85.42	no
125438	aerobic	aerobicⓘ	no	88.93	no
125438	spore-forming	spore-formingⓘ	no	95.52	no
125438	thermophilic	thermophileⓘ	no	95.96	yes
125438	flagellated	motile2+ⓘ	no	91.94	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66355	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107272
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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