Name: Ligilactobacillus salivarius JCM 1040
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 160944

Type strain:

Species: Ligilactobacillus salivarius

Culture col. no.: JCM 1040

Strain history: T. Mitsuoka ChN-F-1-6 <-- G. Reuter strain VC.

NCBI tax ID(s): 1624 (species)

SI-ID 63138

JCM 1040

Special Collections

Other strains from Ligilactobacillus salivarius

Section

Ligilactobacillus salivarius JCM 1040 is a bacterium that was isolated from Human intestine.

Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Ligilactobacillus*
	Species	**Ligilactobacillus salivarius**
	Full Scientific Name (LPSN)	Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020

	Synonym	Lactobacillus salivarius subsp. salicinius
	Synonym	Lactobacillus salivarius

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %91.063

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %99

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Human intestine
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Ligilactobacillus salivarius JCM 1040	GCA_002079525	scaffold	GenBank ENA	1624 tax ID	*
[Ref.: #66792]	Lactobacillus salivarius strain JCM 1040	1624.55	wgs	PATRIC	1624 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Ligilactobacillus salivarius JCM 1040 NCBI: GCA_002079525.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ligilactobacillus salivarius JCM 1040 NCBI: GCA_002079525.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.063	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	79.919	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	95.423	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	86.981	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88.932	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 1040

[Ref.: #113109]

SI-ID 63138

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113109

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID63138.1 )

* These data were automatically processed and therefore are not curated

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