Ligilactobacillus salivarius (KCTC 3156, JCM 1046)

Name: Ligilactobacillus salivarius (KCTC 3156, JCM 1046)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160959

Type strain

Culture col. no. KCTC 3156 JCM 1046

NCBI tax ID(s) 1624

Special Collections JCM KCTC

History T. Mitsuoka PNF-7-6.

Links

Ligilactobacillus salivarius JCM 1046 is a mesophilic prokaryote that was isolated from Swine intestine.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 63142

JCM 1046,KCTC 3156

@ref 20215

Last LPSN update 2026-02-09 11:39:01

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Ligilactobacillus

Species Ligilactobacillus salivarius

Full scientific name Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020

Synonyms (2)

Lactobacillus salivarius
Lactobacillus salivarius subsp. salicinius

BacDive ID	Other strains from **Ligilactobacillus salivarius** (22)	Type strain
6665	L. salivarius H066, HO 66, CCUG 31453, LMG 9477, DSM 20555, ... (type strain)
6663	L. salivarius HO-128X, DSM 20492
6664	L. salivarius HO268, HO 268, DSM 20554, ATCC 11742, NCDO ...
158986	L. salivarius WCA-383-APC-5E, DSM 105842
159530	L. salivarius WCA-389-WT-5E, DSM 103789
160645	L. salivarius Cla-CZ-11, DSM 108969
160944	L. salivarius JCM 1040
160950	L. salivarius JCM 1042
160955	L. salivarius JCM 1044
160956	L. salivarius JCM 1045
160960	L. salivarius JCM 1047, KCTC 3157
161212	L. salivarius JCM 1230
165562	L. salivarius JCM 7691
165569	L. salivarius JCM 7706
165574	L. salivarius JCM 7712
165578	L. salivarius JCM 7723
165903	L. salivarius JCM 8662
165904	L. salivarius JCM 8663
165905	L. salivarius JCM 8664
165906	L. salivarius JCM 8665
165933	L. salivarius JCM 8699
165934	L. salivarius JCM 8701

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	91.965

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	microaerophile	94.9

Isolation, sampling and environmental information

Isolation

67770

Sample typeSwine intestine

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM75836v1 assembly for Ligilactobacillus salivarius JCM1046	complete	GCA_000758365	1624.19	2630968332	1624	96.04

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Lactobacillus salivarius subsp. salicinius strain JCM 1046 16S ribosomal RNA gene, partial sequence.	AY137587	1489		1624

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Ligilactobacillus salivarius JCM1046
NCBI: GCA_000758365

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	54.20	no
125439	motility	BacteriaNetⓘ	no	56.30	no
125439	gram_stain	BacteriaNetⓘ	positive	74.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	94.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Ligilactobacillus salivarius JCM1046
NCBI: GCA_000758365.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.97	no
125438	anaerobic	anaerobicⓘ	no	78.35	no
125438	aerobic	aerobicⓘ	no	93.38	no
125438	spore-forming	spore-formingⓘ	no	87.98	no
125438	thermophilic	thermophileⓘ	no	94.03	no
125438	flagellated	motile2+ⓘ	no	88.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Pathway and Production Differences in Branched-Chain Hydroxy Acids as Bioactive Metabolites in Limosilactobacillus fermentum, Ligilactobacillus salivarius, and Latilactobacillus sakei.	Kim DH, Kim SH, Kim SA, Kwak MJ, Han NS, Lee CH.	Int J Mol Sci	10.3390/ijms251810112	2024
Phylogeny	Distinct phenotypes of salivaricin-producing Ligilactobacillus salivarius isolated from the gastrointestinal tract of broiler chickens and laying hens.	Elnar AG, Jang YJ, Eum BG, Kang MH, Hwang GW, Kil DY, Kim GB.	Poult Sci	10.1016/j.psj.2024.104537	2025
	Evidence for the Worldwide Distribution of a Bile Salt Hydrolase Gene in Enterococcus faecium Through Horizontal Gene Transfer.	Kusada H, Tamaki H.	Int J Mol Sci	10.3390/ijms26020612	2025
Genetics	Phylogenomics and comparative genomics of Lactobacillus salivarius, a mammalian gut commensal.	Harris HMB, Bourin MJB, Claesson MJ, O'Toole PW.	Microb Genom	10.1099/mgen.0.000115	2017
Genetics	Unusual genome complexity in Lactobacillus salivarius JCM1046.	Raftis EJ, Forde BM, Claesson MJ, O'Toole PW	BMC Genomics	10.1186/1471-2164-15-771	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Ligilactobacillus salivarius (KCTC 3156, JCM 1046)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000758365

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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