Strain identifier

BacDive ID: 160959

Type strain: No

Species: Ligilactobacillus salivarius

Strain history: T. Mitsuoka PNF-7-6.

NCBI tax ID(s): 1624 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 160959

keywords: genome sequence, Bacteria, mesophilic

description: Ligilactobacillus salivarius JCM 1046 is a mesophilic bacterium that was isolated from Swine intestine.

NCBI tax id

  • NCBI tax id: 1624
  • Matching level: species

strain history

  • @ref: 67770
  • history: T. Mitsuoka PNF-7-6.

doi: 10.13145/bacdive160959.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Ligilactobacillus
  • species: Ligilactobacillus salivarius
  • full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020
  • synonyms

    @refsynonym
    20215Lactobacillus salivarius subsp. salicinius
    20215Lactobacillus salivarius

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Ligilactobacillus

species: Ligilactobacillus salivarius

full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no95.627
69480100positive

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69480no99.912
69481no99

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Swine intestine

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Ligilactobacillus salivarius JCM1046GCA_000758365completencbi1624
66792Lactobacillus salivarius JCM10461624.19completepatric1624
66792Lactobacillus salivarius strain JCM10461624.118plasmidpatric1624
66792Lactobacillus salivarius strain JCM10461624.117plasmidpatric1624
66792Lactobacillus salivarius strain JCM10461624.115plasmidpatric1624
66792Lactobacillus salivarius strain JCM10461624.116plasmidpatric1624
66792Ligilactobacillus salivarius JCM 10462630968332completeimg1624

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno99no
motileno96.298no
flagellatedno97.957no
gram-positiveyes95.064no
anaerobicno71.359no
aerobicno96.887no
halophileyes83.197no
spore-formingno94.812no
glucose-utilyes91.964no
thermophileno97.817yes
glucose-fermentyes89.226no

External links

@ref: 67770

culture collection no.: JCM 1046, KCTC 3156

straininfo link

  • @ref: 113123
  • straininfo: 63142

literature

  • topic: Genetics
  • Pubmed-ID: 25201645
  • title: Unusual genome complexity in Lactobacillus salivarius JCM1046.
  • authors: Raftis EJ, Forde BM, Claesson MJ, O'Toole PW
  • journal: BMC Genomics
  • DOI: 10.1186/1471-2164-15-771
  • year: 2014
  • mesh: Bacteriophages/genetics, Clustered Regularly Interspaced Short Palindromic Repeats/genetics, Conjugation, Genetic, DNA Transposable Elements, DNA, Bacterial/genetics, Gene Order, Genetic Variation, *Genome, Bacterial, *Genomics, Lactobacillus/*genetics/virology, Molecular Sequence Data, Phenotype, Plasmids/genetics, Replicon, Transposases/genetics/metabolism
  • topic2: Phenotype

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
113123Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID63142.1