Strain identifier
BacDive ID: 160959
Type strain:
Species: Ligilactobacillus salivarius
Strain history: T. Mitsuoka PNF-7-6.
NCBI tax ID(s): 1624 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 160959
keywords: genome sequence, Bacteria, mesophilic
description: Ligilactobacillus salivarius JCM 1046 is a mesophilic bacterium that was isolated from Swine intestine.
NCBI tax id
- NCBI tax id: 1624
- Matching level: species
strain history
- @ref: 67770
- history: T. Mitsuoka PNF-7-6.
doi: 10.13145/bacdive160959.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Ligilactobacillus
- species: Ligilactobacillus salivarius
- full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020
synonyms
@ref synonym 20215 Lactobacillus salivarius subsp. salicinius 20215 Lactobacillus salivarius
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Ligilactobacillus
species: Ligilactobacillus salivarius
full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 95.627 | |
69480 | 100 | positive |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 99.912 |
69481 | no | 99 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Swine intestine
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Ligilactobacillus salivarius JCM1046 | GCA_000758365 | complete | ncbi | 1624 |
66792 | Lactobacillus salivarius JCM1046 | 1624.19 | complete | patric | 1624 |
66792 | Lactobacillus salivarius strain JCM1046 | 1624.118 | plasmid | patric | 1624 |
66792 | Lactobacillus salivarius strain JCM1046 | 1624.117 | plasmid | patric | 1624 |
66792 | Lactobacillus salivarius strain JCM1046 | 1624.115 | plasmid | patric | 1624 |
66792 | Lactobacillus salivarius strain JCM1046 | 1624.116 | plasmid | patric | 1624 |
66792 | Ligilactobacillus salivarius JCM 1046 | 2630968332 | complete | img | 1624 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 99 | no |
motile | no | 96.298 | no |
flagellated | no | 97.957 | no |
gram-positive | yes | 95.064 | no |
anaerobic | no | 71.359 | no |
aerobic | no | 96.887 | no |
halophile | yes | 83.197 | no |
spore-forming | no | 94.812 | no |
glucose-util | yes | 91.964 | no |
thermophile | no | 97.817 | yes |
glucose-ferment | yes | 89.226 | no |
External links
@ref: 67770
culture collection no.: JCM 1046, KCTC 3156
straininfo link
- @ref: 113123
- straininfo: 63142
literature
- topic: Genetics
- Pubmed-ID: 25201645
- title: Unusual genome complexity in Lactobacillus salivarius JCM1046.
- authors: Raftis EJ, Forde BM, Claesson MJ, O'Toole PW
- journal: BMC Genomics
- DOI: 10.1186/1471-2164-15-771
- year: 2014
- mesh: Bacteriophages/genetics, Clustered Regularly Interspaced Short Palindromic Repeats/genetics, Conjugation, Genetic, DNA Transposable Elements, DNA, Bacterial/genetics, Gene Order, Genetic Variation, *Genome, Bacterial, *Genomics, Lactobacillus/*genetics/virology, Molecular Sequence Data, Phenotype, Plasmids/genetics, Replicon, Transposases/genetics/metabolism
- topic2: Phenotype
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
113123 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID63142.1 |