Ligilactobacillus salivarius (JCM 1042)

Name: Ligilactobacillus salivarius (JCM 1042)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160950

Type strain

Culture col. no. JCM 1042

NCBI tax ID(s) 1624

Special Collections JCM

Links

Ligilactobacillus salivarius JCM 1042 is a mesophilic prokaryote that was isolated from Human intestine.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 63139

JCM 1042

@ref 20215

Last LPSN update 2025-12-16 10:08:37

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Ligilactobacillus

Species Ligilactobacillus salivarius

Full scientific name Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020

Synonyms (2)

Lactobacillus salivarius
Lactobacillus salivarius subsp. salicinius

BacDive ID	Other strains from **Ligilactobacillus salivarius** (22)	Type strain
6665	L. salivarius H066, HO 66, CCUG 31453, LMG 9477, DSM 20555, ... (type strain)
6663	L. salivarius HO-128X, DSM 20492
6664	L. salivarius HO268, HO 268, DSM 20554, ATCC 11742, NCDO ...
158986	L. salivarius WCA-383-APC-5E, DSM 105842
159530	L. salivarius WCA-389-WT-5E, DSM 103789
160645	L. salivarius Cla-CZ-11, DSM 108969
160944	L. salivarius JCM 1040
160955	L. salivarius JCM 1044
160956	L. salivarius JCM 1045
160959	L. salivarius JCM 1046, KCTC 3156
160960	L. salivarius JCM 1047, KCTC 3157
161212	L. salivarius JCM 1230
165562	L. salivarius JCM 7691
165569	L. salivarius JCM 7706
165574	L. salivarius JCM 7712
165578	L. salivarius JCM 7723
165903	L. salivarius JCM 8662
165904	L. salivarius JCM 8663
165905	L. salivarius JCM 8664
165906	L. salivarius JCM 8665
165933	L. salivarius JCM 8699
165934	L. salivarius JCM 8701

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	92.054

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

67770

Sample typeHuman intestine

Taxonmaps

69479

Global distribution of 16S sequence LC260012 (>99% sequence identity) for Ligilactobacillus salivarius from Microbeatlas

Aquatic Samples	3859
Soil Samples	1629
Animal Samples	69457
Plant Samples	834
Total Samples	75779

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM207950v1 assembly for Ligilactobacillus salivarius JCM 1042	scaffold	GCA_002079505	1624.54	1624	65.17

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Lactobacillus salivarius gene for 16S ribosomal RNA, partial sequence, strain: JCM 1042	LC260012	1500		1624
124043	Lactobacillus salivarius subsp. salicinius strain JCM 1042 16S ribosomal RNA gene, partial sequence.	AY137584	1519		1624

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Ligilactobacillus salivarius JCM 1042
NCBI: GCA_002079505

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	66.30	no
125439	motility	BacteriaNetⓘ	yes	67.80	no
125439	gram_stain	BacteriaNetⓘ	positive	70.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	87.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Ligilactobacillus salivarius JCM 1042
NCBI: GCA_002079505.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.05	no
125438	anaerobic	anaerobicⓘ	no	78.83	no
125438	aerobic	aerobicⓘ	no	94.80	no
125438	spore-forming	spore-formingⓘ	no	88.84	no
125438	thermophilic	thermophileⓘ	no	95.53	no
125438	flagellated	motile2+ⓘ	no	88.93	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Phylogenomics and comparative genomics of Lactobacillus salivarius, a mammalian gut commensal.	Harris HMB, Bourin MJB, Claesson MJ, O'Toole PW.	Microb Genom	10.1099/mgen.0.000115	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Ligilactobacillus salivarius (JCM 1042)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002079505

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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