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Strain identifier

BacDive ID: 160950

Type strain: No

Species: Ligilactobacillus salivarius

Strain history: T. Mitsuoka ChN-g-2-13 <-- G. Reuter B52/4d.

NCBI tax ID(s): 1624 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 7.1 (current version):
version 7:
version 6:
version 7.1 (current version)

General

@ref: 67770

BacDive-ID: 160950

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Ligilactobacillus salivarius JCM 1042 is a mesophilic bacterium that was isolated from Human intestine.

NCBI tax id

  • NCBI tax id: 1624
  • Matching level: species

strain history: T. Mitsuoka ChN-g-2-13 <-- G. Reuter B52/4d.

doi: 10.13145/bacdive160950.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Ligilactobacillus
  • species: Ligilactobacillus salivarius
  • full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020
  • synonyms

    @refsynonym
    20215Lactobacillus salivarius subsp. salicinius
    20215Lactobacillus salivarius

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Ligilactobacillus

species: Ligilactobacillus salivarius

full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 91.997

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.11

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 91.715

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Human intestine

taxonmaps

  • @ref: 69479
  • File name: preview.99_595.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_379;97_427;98_487;99_595&stattab=map
  • Last taxonomy: Ligilactobacillus salivarius
  • 16S sequence: LC260012
  • Sequence Identity:
  • Total samples: 75779
  • soil counts: 1629
  • aquatic counts: 3859
  • animal counts: 69457
  • plant counts: 834

Sequence information

16S sequences

  • @ref: 67770
  • description: Lactobacillus salivarius gene for 16S ribosomal RNA, partial sequence, strain: JCM 1042
  • accession: LC260012
  • length: 1500
  • database: ena
  • NCBI tax ID: 1624

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Ligilactobacillus salivarius JCM 1042GCA_002079505scaffoldncbi1624
66792Lactobacillus salivarius strain JCM 10421624.54wgspatric1624
66792Flavobacteriales bacterium ZH-13may13-66GCA_947493605contigpatric2021391

External links

@ref: 67770

culture collection no.: JCM 1042

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes