Strain identifier
BacDive ID: 160950
Type strain: 
Species: Ligilactobacillus salivarius
Strain history: T. Mitsuoka ChN-g-2-13 <-- G. Reuter B52/4d.
NCBI tax ID(s): 1624 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 160950
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Ligilactobacillus salivarius JCM 1042 is a mesophilic bacterium that was isolated from Human intestine.
NCBI tax id
- NCBI tax id: 1624
- Matching level: species
strain history
- @ref: 67770
- history: T. Mitsuoka ChN-g-2-13 <-- G. Reuter B52/4d.
doi: 10.13145/bacdive160950.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Ligilactobacillus
- species: Ligilactobacillus salivarius
- full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020
synonyms
@ref synonym 20215 Lactobacillus salivarius subsp. salicinius 20215 Lactobacillus salivarius
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Ligilactobacillus
species: Ligilactobacillus salivarius
full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 97.489 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.93
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Human intestine
taxonmaps
- @ref: 69479
- File name: preview.99_595.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_379;97_427;98_487;99_595&stattab=map
- Last taxonomy: Ligilactobacillus salivarius
- 16S sequence: LC260012
- Sequence Identity:
- Total samples: 75779
- soil counts: 1629
- aquatic counts: 3859
- animal counts: 69457
- plant counts: 834
Sequence information
16S sequences
- @ref: 67770
- description: Lactobacillus salivarius gene for 16S ribosomal RNA, partial sequence, strain: JCM 1042
- accession: LC260012
- length: 1500
- database: ena
- NCBI tax ID: 1624
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Ligilactobacillus salivarius JCM 1042 | GCA_002079505 | scaffold | ncbi | 1624 |
| 66792 | Lactobacillus salivarius strain JCM 1042 | 1624.54 | wgs | patric | 1624 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 60 | no |
| flagellated | no | 98.297 | no |
| gram-positive | yes | 95.423 | no |
| anaerobic | no | 72.925 | no |
| aerobic | no | 96.849 | no |
| halophile | yes | 81.615 | no |
| spore-forming | no | 94.95 | no |
| glucose-util | yes | 91.547 | no |
| thermophile | no | 97.587 | yes |
| motile | no | 96.226 | no |
| glucose-ferment | yes | 87.43 | no |
External links
@ref: 67770
culture collection no.: JCM 1042
straininfo link
- @ref: 113115
- straininfo: 63139
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 113115 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID63139.1 |