Strain identifier
BacDive ID: 160944
Type strain: 
Species: Ligilactobacillus salivarius
Strain history: T. Mitsuoka ChN-F-1-6 <-- G. Reuter strain VC.
NCBI tax ID(s): 1624 (species)
version 9.1 (current version)
General
@ref: 67770
BacDive-ID: 160944
keywords: genome sequence, Bacteria
description: Ligilactobacillus salivarius JCM 1040 is a bacterium that was isolated from Human intestine.
NCBI tax id
- NCBI tax id: 1624
- Matching level: species
strain history
- @ref: 67770
- history: T. Mitsuoka ChN-F-1-6 <-- G. Reuter strain VC.
doi: 10.13145/bacdive160944.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Ligilactobacillus
- species: Ligilactobacillus salivarius
- full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020
synonyms
@ref synonym 20215 Lactobacillus salivarius subsp. salicinius 20215 Lactobacillus salivarius
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Ligilactobacillus
species: Ligilactobacillus salivarius
full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 91.063
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: no
- confidence: 99
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Human intestine
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Ligilactobacillus salivarius JCM 1040 | GCA_002079525 | scaffold | ncbi | 1624 |
| 66792 | Lactobacillus salivarius strain JCM 1040 | 1624.55 | wgs | patric | 1624 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 99 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 91.063 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 79.919 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 95.423 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 86.981 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94.5 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 88.932 | no |
External links
@ref: 67770
culture collection no.: JCM 1040
straininfo link
- @ref: 113109
- straininfo: 63138
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
| 113109 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID63138.1 |