Strain identifier

BacDive ID: 159530

Type strain: No

Species: Ligilactobacillus salivarius

Strain Designation: WCA-389-WT-5E

Strain history: <- D. Wylensek, TU Munich, Freising-Weihenstephan, Germany; WCA-389-WT-5E

NCBI tax ID(s): 1624 (species)

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General

@ref: 66356

BacDive-ID: 159530

DSM-Number: 103789

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Ligilactobacillus salivarius WCA-389-WT-5E is a mesophilic bacterium that was isolated from feces; pig, 3.5 month old, wild type.

NCBI tax id

  • NCBI tax id: 1624
  • Matching level: species

strain history

  • @ref: 66356
  • history: <- D. Wylensek, TU Munich, Freising-Weihenstephan, Germany; WCA-389-WT-5E

doi: 10.13145/bacdive159530.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Ligilactobacillus
  • species: Ligilactobacillus salivarius
  • full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020
  • synonyms

    @refsynonym
    20215Lactobacillus salivarius subsp. salicinius
    20215Lactobacillus salivarius

@ref: 66356

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Ligilactobacillus

species: Ligilactobacillus salivarius

full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020

strain designation: WCA-389-WT-5E

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
66356MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
66356WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)yeshttps://mediadive.dsmz.de/medium/339Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 66356
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 66356
  • sample type: feces; pig, 3.5 month old, wild type
  • geographic location: Kranzberg (Bavaria)
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Mammals#Suidae (Pig,Swine)

taxonmaps

  • @ref: 69479
  • File name: preview.99_595.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_379;97_427;98_487;99_595&stattab=map
  • Last taxonomy: Ligilactobacillus salivarius
  • 16S sequence: MN537462
  • Sequence Identity:
  • Total samples: 75779
  • soil counts: 1629
  • aquatic counts: 3859
  • animal counts: 69457
  • plant counts: 834

Safety information

risk assessment

  • @ref: 66356
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 66356
  • description: Lactobacillus salivarius strain DSM 103789 16S ribosomal RNA gene, partial sequence
  • accession: MN537462
  • length: 1513
  • database: ena
  • NCBI tax ID: 1624

Genome sequences

  • @ref: 66792
  • description: Ligilactobacillus salivarius WCA-389-WT-5E
  • accession: GCA_012843615
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1624

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno96.346no
flagellatedno98.238no
gram-positiveyes95.129no
anaerobicno65.862no
aerobicno97.408no
halophileyes85.772no
spore-formingno95.241no
thermophileno97.443yes
glucose-utilyes92.565no
glucose-fermentyes90.083no

External links

@ref: 66356

culture collection no.: DSM 103789

straininfo link

  • @ref: 112011
  • straininfo: 400841

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66356Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103789Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103789)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
112011Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400841.1