unclassified bacterium (DSM 108225, H3_16)

Name: unclassified bacterium (DSM 108225, H3_16)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159093

Type strain

Strain Designation H3_16

Culture col. no. DSM 108225 H3_16

NCBI tax ID(s) 1869227

Special Collections DSMZ

History DSMZ <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; H3_16

unclassified bacterium H3_16 is a prokaryote that was isolated from human faeces.

Name and taxonomic classification

Culture Collection Numbers

DSM 108225 H3_16

@ref 65916

Phylum Not assigned to order

Class Not assigned to order

Order Not assigned to order

Family Not assigned to family

Genus unclassified

Species unclassified bacterium

Full scientific name unclassified bacterium

Strain designation H3_16

Type strain no

BacDive ID	Other strains from unclassified bacterium (64)	Type strain
174674	u. bacterium KA00274, DSM 112988 (type strain)
174675	u. bacterium UPII 610-J, DSM 112989 (type strain)
2511	u. bacterium LD64, DSM 11001
23365	u. bacterium SIO, DSM 2170, ATCC 19263, CCM 326, NCMB ...
23366	u. bacterium 008-523, DSM 3039
23368	u. bacterium Re10, DSM 4661
23369	u. bacterium Wo021, DSM 5672
23370	u. bacterium KN032, DSM 5673
23371	u. bacterium US2, DSM 5848
23374	u. bacterium FlGlyM, DSM 6945
23376	u. bacterium 16AV, DSM 8385
23378	u. bacterium Ia3, DSM 10066
23379	u. bacterium LFR, DSM 10174, ATCC 51258
23386	u. bacterium mXyS1, DSM 12567
23387	u. bacterium PB90-2, DSM 12558
23389	u. bacterium XB90, DSM 12595
23390	u. bacterium 72Chol, DSM 12783
23392	u. bacterium NapHS2, DSM 14454
23394	u. bacterium EbS7, DSM 15769
23395	u. bacterium MLMS-1, DSM 17814
23396	u. bacterium 95, DSM 30001, ATCC 19103, IAM 1433
24688	u. bacterium EL-44, DSM 11444
24711	u. bacterium agV6, DSM 13281
24712	u. bacterium AZD10A1, DSM 17878, CCUG 52015
24713	u. bacterium AP57, DSM 18372, CECT 7177
130784	u. bacterium CH 1359, DSM 12902
130785	u. bacterium DSM 14861, HEL Hel43, HEL 43
130786	u. bacterium JWIYJL-CPRB 1, JW/YJL-CPRB1, DSM 17738
130792	u. bacterium G.Slu-02, DSM 21096
130793	u. bacterium L-1031, DSM 22395
130970	u. bacterium CHL6 7, DSM 10147
130971	u. bacterium CHL6 8, DSM 10148
132009	u. bacterium DSM 17195, Jamm 0065
132016	u. bacterium FSW06-301, DSM 27188
132022	u. bacterium SB2, CSURP1926, DSM 100743, CSUR P1926
132029	u. bacterium P2414, CSURP2414, DSM 102218, CSUR P2414
132035	u. bacterium CSURP2434, DSM 102883, CSUR P2434, Marseille-2434
132037	u. bacterium LC8, DSM 103728
139746	u. bacterium CB Cb502, CB 502, DSM 53758
139748	u. bacterium FGR15-07, DSM 26766, KACC 15970
139749	u. bacterium DSM 27371, WR 21
139751	u. bacterium UV 2.5, DSM 100784
139754	u. bacterium 2-bin, DSM 105719, KCTC 32235, CFCC 10925
157746	u. bacterium RS22 G, DSM 23554
157753	u. bacterium HV4-6-A5C, DSM 104144
157759	u. bacterium f-CSY, f_CSY, DSM 107475
157760	u. bacterium f-RGN, f_RGN, DSM 107527
157766	u. bacterium H2-39, H2_39, DSM 108347
159078	u. bacterium DSM 23666, CAT 12a
159091	u. bacterium HV4-5-C5C, DSM 103941
160193	u. bacterium KNH, DSM 24760
169308	u. bacterium D16, 4/1/38B, DSM 27791, BEI HM-79
169310	u. bacterium 7D4C2, DSM 110548
169311	u. bacterium NM08_P-01, NM08, P-01, DSM 110563
174669	u. bacterium ING2-ESF, DSM 28740
174670	u. bacterium F4-6, DSM 29277
174671	u. bacterium MO-YS, DSM 29925
174672	u. bacterium CSURP1934, Mt11, DSM 100589, CSUR P1934
174676	u. bacterium NC2008, DSM 116427
174677	u. bacterium KH1P17, DSM 116970
174678	u. bacterium MA2020, DSM 116971
176606	u. bacterium AN20T, DSM 111154, CCM 9041
176607	u. bacterium AN421T, DSM 111155, CCM 9040
176608	u. bacterium AN502, DSM 111156

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65916	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65916	positive	growth	37

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
65916	-	-	-	-	+/-	+/-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent	Latitude	Longitude
65916	human faeces	Homo sapiens	United Kingdom	GBR	Europe	52.0797	0.1855 52.0797/0.1855

Interaction and safety

Sequence information

Genome-based predictions

Literature

References

#65916	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108225
#68380	Automatically annotated from API rID32A .

Rate our new design

Content

About us