Name: unclassified bacterium DSM 4029
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2675

Type strain:

Species: unclassified bacterium

Culture col. no.: DSM 4029, ATCC 29733, VPI C48-50

Strain history: <- ATCC <- L.V. Holdeman, VPI C48-50 (Clostridium P)

NCBI tax ID(s): 1869227 (species)

Other strains from unclassified bacterium

u. bacterium OL, DSM 104464, VKM B-3021 (type strain)
u. bacterium CreDm1, DSM 6526
u. bacterium LD64, DSM 11001
u. bacterium SIO, DSM 2170, ATCC 19263, CCM ...
u. bacterium 008-523, DSM 3039
u. bacterium B6, DSM 3644
u. bacterium Re10, DSM 4661
u. bacterium Wo021, DSM 5672
u. bacterium KN032, DSM 5673
u. bacterium US2, DSM 5848
u. bacterium PHB, DSM 6754
u. bacterium FlGlyM, DSM 6945
u. bacterium 16AV, DSM 8385
u. bacterium DMA, DSM 8827
u. bacterium Ia3, DSM 10066
u. bacterium LFR, DSM 10174, ATCC 51258
u. bacterium 19gly3, DSM 11262
u. bacterium RZLAS, DSM 11480
u. bacterium DSM 11764, MUA MuA21, MUA 21
u. bacterium mXyS1, DSM 12567
u. bacterium PB90-2, DSM 12558
u. bacterium XB90, DSM 12595
u. bacterium 72Chol, DSM 12783
u. bacterium 4AA7, DSM 13636
u. bacterium NapHS2, DSM 14454
u. bacterium EbS7, DSM 15769
u. bacterium MLMS-1, DSM 17814
u. bacterium 95, DSM 30001, ATCC 19103, IAM ...
u. bacterium EL-44, DSM 11444
u. bacterium EL-182, DSM 12549
u. bacterium agV6, DSM 13281
u. bacterium AZD10A1, DSM 17878, CCUG 52015
u. bacterium AP57, DSM 18372, CECT 7177
u. bacterium CH 1359, DSM 12902
u. bacterium DSM 14861, HEL Hel43, HEL 43
u. bacterium JWIYJL-CPRB 1, JW/YJL-CPRB1, DSM ...
u. bacterium G.Slu-02, DSM 21096
u. bacterium L-1031, DSM 22395
u. bacterium CHL6 7, DSM 10147
u. bacterium CHL6 8, DSM 10148
u. bacterium DSM 17195, Jamm 0065
u. bacterium FSW06-301, DSM 27188
u. bacterium CL-2, DSM 28716, CSUR P1230
u. bacterium SB2, DSM 100743, CSUR P1926
u. bacterium P2414, DSM 102218, CSUR P2414
u. bacterium DSM 102883, CSUR P2434, Marseille-2434
u. bacterium LC8, DSM 103728
u. bacterium DSM 53758, CB Cb502, CB 502
u. bacterium FGR15-07, DSM 26766, KACC 15970
u. bacterium DSM 27371, WR 21
u. bacterium UV 2.5, DSM 100784
u. bacterium 2-bin, DSM 105719, KCTC 32235, ...
u. bacterium S15, CCUG 68986, DSM 105791, CIP ...
u. bacterium RS22 G, DSM 23554
u. bacterium HV4-6-A5C, DSM 104144
u. bacterium HV4-5-B5C, DSM 104463
u. bacterium Melo94, DSM 105095
u. bacterium f-CSY, f_CSY, DSM 107475
u. bacterium f-RGN, f_RGN, DSM 107527
u. bacterium f-CXY, f_CXY, DSM 107528
u. bacterium APC924/74, DSM 108024
u. bacterium H2-39, H2_39, DSM 108347
u. bacterium 639, DSM 10557, IFAM 3594
u. bacterium DSM 23666, CAT 12a
u. bacterium B1107, A0630, DSM 24543, CGMCC ...
u. bacterium AO627, B1132, DSM 24544, CGMCC ...
u. bacterium GH-B6, DSM 24633
u. bacterium HV4-5-C5C, DSM 103941
u. bacterium H3_16, DSM 108225
u. bacterium 6/3/54 A FAA, DSM 24432
u. bacterium IFRC300, DSM 24590
u. bacterium KNH, DSM 24760
u. bacterium CP 19, DSM 24779
u. bacterium NYFB, DSM 25439
u. bacterium M3/9, DSM 100058
u. bacterium D16, 4/1/38B, DSM 27791, BEI HM-79
u. bacterium 7D4C2, DSM 110548
u. bacterium NM08_P-01, NM08, P-01, DSM 110563

Section

unclassified bacterium DSM 4029 is an anaerobe, mesophilic, Gram-positive prokaryote that was isolated from human faeces.

Gram-positive
anaerobe
mesophilic
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

[Ref.: #1578]	Phylum	Not assigned to order
[Ref.: #1578]	Class	Not assigned to order
[Ref.: #1578]	Order	Clostridiales
[Ref.: #1578]	Family	Not assigned to family
[Ref.: #1578]	Genus	unclassified
[Ref.: #1578]	Species	unclassified bacterium
[Ref.: #1578]	Full Scientific Name	unclassified bacterium

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1578]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #1578]

Culture medium growth

[Ref.: #1578]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1578]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1578]			growth	37 °C

[Ref.: #1578]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1578]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.647

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.803

[Ref.: #1578]	Name of produced compound	12alpha hydroxysteroid dehydrogenase
[Ref.: #1578]	Name of produced compound	steroids

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1578]	Sample type/isolated from	human faeces
[Ref.: #1578]	Country	USA
[Ref.: #1578]	Country ISO 3 Code	USA
[Ref.: #1578]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bittarella massiliensis DSM 4029	GCA_900129515	contig	GenBank	1720313 tax ID	*
[Ref.: #66792]	Clostridium sp. ATCC 29733	GCA_000466605	scaffold	GenBank	1507 tax ID	*
[Ref.: #66792]	Clostridium sp. ATCC 29733	1507.3	wgs	PATRIC	1507 tax ID	*
[Ref.: #66792]	Clostridium sp. DSM 4029	1882754.4	wgs	PATRIC	1882754 tax ID	*
[Ref.: #66792]	Clostridium sp. DSM 4029	2695420950	draft	JGI IMG/M	1882754 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Clostridium sp. DSM 4029 PATRIC: 1882754.4
[Ref.: #69481]	spore-forming	no	81	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium sp. ATCC 29733 ATCC 29733 NCBI: GCA_000466605.1
[Ref.: #69480]	motile	no	92.053	no
[Ref.: #69480]	flagellated	no	95.85	no
[Ref.: #69480]	gram-positive	yes	92.512	no
[Ref.: #69480]	anaerobic	yes	99.482	yes
[Ref.: #69480]	aerobic	no	98.362	yes
[Ref.: #69480]	halophile	no	83.974	no
[Ref.: #69480]	spore-forming	no	78.866	no
[Ref.: #69480]	thermophile	no	98.958	yes
[Ref.: #69480]	glucose-util	yes	81.344	no
[Ref.: #69480]	glucose-ferment	yes	55.347	no

Availability in culture collections External links

[Ref.: #1578]

Culture collection no.

DSM 4029, ATCC 29733, VPI C48-50

References

#1578

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4029

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Clostridium sp. DSM 4029

Clostridium sp. ATCC 29733 ATCC 29733

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