"Lampropedia puyangensis" (DSM 105719, KCTC 32235, CFCC 10925)

BacDive ID 139754

Type strain

Strain Designation 2-bin

Culture col. no. DSM 105719 KCTC 32235 CFCC 10925 2-bin

NCBI tax ID(s) 1330072

Special Collections DSMZ KCTC

History DSMZ <- KCTC <- Y. Li, The Key Laboratory of State Forestry Administration on Forest Protection, Chinese Academy of Forestry, Beijing, China; 2-bin, Lampropedia puyangensis

Links

"Lampropedia puyangensis" 2-bin is a bacterium that was isolated from symptomatic bark of Populus euramericana.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405843

KCTC 32235,DSM 105719

@ref 20215

Last LPSN update 2026-05-29 08:39:34

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Lampropedia

Species "Lampropedia puyangensis"

Full scientific name Lampropedia puyangensis Li et al. 2015

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97.5
125439	negative	98.855

Multimedia

@ref:	42365
multimedia content:	DSM_105719.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_105719.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
42365	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
42365	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.476

Spore formation

@ref	Spore formation	Confidence
125439		99.962

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Bark

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
42365	symptomatic bark of Populus euramericana	Populus x euramericana	Qingfeng, Puyang City, Henan province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence JX680314 (>99% sequence identity) for Lampropedia puyangensis from Microbeatlas

Aquatic Samples	196
Soil Samples	15
Animal Samples	101
Plant Samples	46
Total Samples	358

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM483328v1 assembly for Lampropedia puyangensis 2-bin	scaffold	GCA_004833285	1330072.3	2889496559	1330072	61.73

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
42365	Lampropedia puyangensis strain 2-bin 16S ribosomal RNA gene, partial sequence	JX680314	1442		1330072

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM483328v1 assembly for Lampropedia puyangensis 2-bin
BV-BRC: 1330072.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.48	no
125439	gram_stain	BacteriaNetⓘ	negative	98.86	no
125439	motility	BacteriaNetⓘ	yes	80.79	no
125439	spore_formation	BacteriaNetⓘ	no	99.96	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lampropedia puyangensis 2-bin
NCBI: GCA_004833285.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.50	no
125438	anaerobic	anaerobicⓘ	no	96.44	no
125438	aerobic	aerobicⓘ	yes	81.17	no
125438	spore-forming	spore-formingⓘ	no	88.19	no
125438	thermophilic	thermophileⓘ	no	96.00	yes
125438	flagellated	motile2+ⓘ	yes	53.74	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lampropedia aestuarii sp. nov., isolated from the estuary of a freshwater river.	Zhao YT, Li YP, Xiao W, Liu WH, Cui XL, Wang YX.	Int J Syst Evol Microbiol	10.1099/ijsem.0.003710	2020
Phylogeny	Lampropedia puyangensis sp. nov., isolated from symptomatic bark of Populus x euramericana canker and emended description of Lampropedia hyalina (Ehrenberg 1832) Lee et al. 2004.	Li Y, Wang T, Piao CG, Wang LF, Tian GZ, Zhu TH, Guo MW	Antonie Van Leeuwenhoek	10.1007/s10482-015-0483-6	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42365	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105719
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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"Lampropedia puyangensis" (DSM 105719, KCTC 32235, CFCC 10925)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_004833285

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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