Name: Lampropedia puyangensis 2-bin
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 139754

Type strain:

Species: Lampropedia puyangensis

Strain Designation: 2-bin

Culture col. no.: DSM 105719, KCTC 32235, CFCC 10925

Strain history: <- KCTC <- Y. Li, The Key Laboratory of State Forestry Administration on Forest Protection, Chinese Academy of Forestry, Beijing, China; 2-bin, Lampropedia puyangensis

NCBI tax ID(s): 1869227 (species)

Section

Lampropedia puyangensis 2-bin is a mesophilic, Gram-negative bacterium that was isolated from symptomatic bark of Populus euramericana.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Lampropedia*
	Species	"Lampropedia puyangensis"
	Full Scientific Name (LPSN)	Lampropedia puyangensis Li et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.969

Multimedia content

[Ref.: #42365]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42365]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #42365]

Culture medium growth

[Ref.: #42365]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42365]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42365]			growth	28 °C

[Ref.: #42365]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.954

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42365]	Sample type/isolated from	symptomatic bark of Populus euramericana
[Ref.: #42365]	Host species	Populus x euramericana
[Ref.: #42365]	Geographic location (country and/or sea, region)	Qingfeng, Puyang City, Henan province
[Ref.: #42365]	Country	China
[Ref.: #42365]	Country ISO 3 Code	CHN
[Ref.: #42365]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Bark

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX680314 (>99% sequence identity) for Lampropedia puyangensis from Microbeatlas

Aquatic Samples	196
Soil Samples	15
Animal Samples	101
Plant Samples	46
Total Samples	358

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42365]	Lampropedia puyangensis strain 2-bin 16S ribosomal RNA gene, partial sequence	JX680314	1442	ENA	1330072 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lampropedia puyangensis 2-bin	GCA_004833285	scaffold	GenBank	1330072 tax ID	*
[Ref.: #66792]	Lampropedia puyangensis strain 2-bin	1330072.3	wgs	PATRIC	1330072 tax ID	*
[Ref.: #66792]	Lampropedia puyangensis 2-bin	2889496559	draft	JGI IMG/M	1330072 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lampropedia puyangensis 2-bin NCBI: GCA_004833285.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lampropedia puyangensis 2-bin NCBI: GCA_004833285.1
[Ref.: #69480]	motile	no	83.15	no
[Ref.: #69480]	flagellated	no	86.16	no
[Ref.: #69480]	gram-positive	no	97.408	no
[Ref.: #69480]	anaerobic	no	98.564	no
[Ref.: #69480]	aerobic	yes	93.102	no
[Ref.: #69480]	halophile	no	93.976	no
[Ref.: #69480]	spore-forming	no	94.913	no
[Ref.: #69480]	glucose-util	no	68.555	no
[Ref.: #69480]	thermophile	no	98.532	yes
[Ref.: #69480]	glucose-ferment	no	88.852	no

Availability in culture collections External links

[Ref.: #42365]

Culture collection no.

DSM 105719, KCTC 32235, CFCC 10925

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lampropedia puyangensis sp. nov., isolated from symptomatic bark of Populus x euramericana canker and emended description of Lampropedia hyalina (Ehrenberg 1832) Lee et al. 2004.	Li Y, Wang T, Piao CG, Wang LF, Tian GZ, Zhu TH, Guo MW	Antonie Van Leeuwenhoek	10.1007/s10482-015-0483-6	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42365

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105719

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species unclassified bacterium in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF