unclassified bacterium (DSM 2170, ATCC 19263, CCM 326)

Name: unclassified bacterium (DSM 2170, ATCC 19263, CCM 326)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23365

Type strain

Strain Designation SIO

Culture col. no. DSM 2170 ATCC 19263 CCM 326 NCMB 1052 CCUG 1829 1 more

NCBI tax ID(s) 1869227

Special Collections DSMZ CCUG

History DSMZ <- CCM (Vibrio sp.) <- C.E. ZoBell (Vibrio adaptus SIO)

unclassified bacterium SIO is a prokaryote that was isolated from Sea water.

Name and taxonomic classification

Culture Collection Numbers

DSM 2170 ATCC 19263 CCM 326 NCMB 1052 CCUG 1829 SIO

@ref 992

Phylum Not assigned to order

Class Not assigned to order

Order Clostridiales

Family Not assigned to family

Genus unclassified

Species unclassified bacterium

Full scientific name unclassified bacterium

Strain designation SIO

Type strain no

BacDive ID	Other strains from unclassified bacterium (64)	Type strain
174674	u. bacterium KA00274, DSM 112988 (type strain)
174675	u. bacterium UPII 610-J, DSM 112989 (type strain)
2511	u. bacterium LD64, DSM 11001
23366	u. bacterium 008-523, DSM 3039
23368	u. bacterium Re10, DSM 4661
23369	u. bacterium Wo021, DSM 5672
23370	u. bacterium KN032, DSM 5673
23371	u. bacterium US2, DSM 5848
23374	u. bacterium FlGlyM, DSM 6945
23376	u. bacterium 16AV, DSM 8385
23378	u. bacterium Ia3, DSM 10066
23379	u. bacterium LFR, DSM 10174, ATCC 51258
23386	u. bacterium mXyS1, DSM 12567
23387	u. bacterium PB90-2, DSM 12558
23389	u. bacterium XB90, DSM 12595
23390	u. bacterium 72Chol, DSM 12783
23392	u. bacterium NapHS2, DSM 14454
23394	u. bacterium EbS7, DSM 15769
23395	u. bacterium MLMS-1, DSM 17814
23396	u. bacterium 95, DSM 30001, ATCC 19103, IAM 1433
24688	u. bacterium EL-44, DSM 11444
24711	u. bacterium agV6, DSM 13281
24712	u. bacterium AZD10A1, DSM 17878, CCUG 52015
24713	u. bacterium AP57, DSM 18372, CECT 7177
130784	u. bacterium CH 1359, DSM 12902
130785	u. bacterium DSM 14861, HEL Hel43, HEL 43
130786	u. bacterium JWIYJL-CPRB 1, JW/YJL-CPRB1, DSM 17738
130792	u. bacterium G.Slu-02, DSM 21096
130793	u. bacterium L-1031, DSM 22395
130970	u. bacterium CHL6 7, DSM 10147
130971	u. bacterium CHL6 8, DSM 10148
132009	u. bacterium DSM 17195, Jamm 0065
132016	u. bacterium FSW06-301, DSM 27188
132022	u. bacterium SB2, CSURP1926, DSM 100743, CSUR P1926
132029	u. bacterium P2414, CSURP2414, DSM 102218, CSUR P2414
132035	u. bacterium CSURP2434, DSM 102883, CSUR P2434, Marseille-2434
132037	u. bacterium LC8, DSM 103728
139746	u. bacterium CB Cb502, CB 502, DSM 53758
139748	u. bacterium FGR15-07, DSM 26766, KACC 15970
139749	u. bacterium DSM 27371, WR 21
139751	u. bacterium UV 2.5, DSM 100784
139754	u. bacterium 2-bin, DSM 105719, KCTC 32235, CFCC 10925
157746	u. bacterium RS22 G, DSM 23554
157753	u. bacterium HV4-6-A5C, DSM 104144
157759	u. bacterium f-CSY, f_CSY, DSM 107475
157760	u. bacterium f-RGN, f_RGN, DSM 107527
157766	u. bacterium H2-39, H2_39, DSM 108347
159078	u. bacterium DSM 23666, CAT 12a
159091	u. bacterium HV4-5-C5C, DSM 103941
159093	u. bacterium H3_16, DSM 108225
160193	u. bacterium KNH, DSM 24760
169308	u. bacterium D16, 4/1/38B, DSM 27791, BEI HM-79
169310	u. bacterium 7D4C2, DSM 110548
169311	u. bacterium NM08_P-01, NM08, P-01, DSM 110563
174669	u. bacterium ING2-ESF, DSM 28740
174670	u. bacterium F4-6, DSM 29277
174671	u. bacterium MO-YS, DSM 29925
174672	u. bacterium CSURP1934, Mt11, DSM 100589, CSUR P1934
174676	u. bacterium NC2008, DSM 116427
174677	u. bacterium KH1P17, DSM 116970
174678	u. bacterium MA2020, DSM 116971
176606	u. bacterium AN20T, DSM 111154, CCM 9041
176607	u. bacterium AN421T, DSM 111155, CCM 9040
176608	u. bacterium AN502, DSM 111156

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
992	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
992	SEA WATER AGAR (DSMZ Medium 246)		Medium recipe at MediaDive	Name: SEA WATER AGAR (DSMZ Medium 246) Composition: Agar 20.0 g/l Peptone 10.0 g/l Beef extract 10.0 g/l Tap water Sea water

Culture temp

@ref	Growth	Type	Temperature (°C)
992	positive	growth	30

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68374	29016 ChEBI	arginine	-	hydrolysis	from API ID32E
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68374	17057 ChEBI	cellobiose	-	builds acid from	from API ID32E
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68374	18333 ChEBI	D-arabitol	-	builds acid from	from API ID32E
68374	18024 ChEBI	D-galacturonic acid	-	builds acid from	from API ID32E
68374	17634 ChEBI	D-glucose	-	builds acid from	from API ID32E
68368	17634 ChEBI	D-glucose	-	fermentation	from API 20E
68374	16899 ChEBI	D-mannitol	-	builds acid from	from API ID32E
68368	16899 ChEBI	D-mannitol	-	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68374	30849 ChEBI	L-arabinose	-	builds acid from	from API ID32E
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68374	18403 ChEBI	L-arabitol	-	builds acid from	from API ID32E
68374	62345 ChEBI	L-rhamnose	-	builds acid from	from API ID32E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68374	25094 ChEBI	lysine	-	degradation	from API ID32E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68374	15792 ChEBI	malonate	-	assimilation	from API ID32E
68374	17306 ChEBI	maltose	-	builds acid from	from API ID32E
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68374	17268 ChEBI	myo-inositol	-	builds acid from	from API ID32E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68374	18257 ChEBI	ornithine	-	degradation	from API ID32E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68374	18394 ChEBI	palatinose	-	builds acid from	from API ID32E
68374	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API ID32E
68374	15963 ChEBI	ribitol	-	builds acid from	from API ID32E
68374	30911 ChEBI	sorbitol	-	builds acid from	from API ID32E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68374	17992 ChEBI	sucrose	-	builds acid from	from API ID32E
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68374	27082 ChEBI	trehalose	-	builds acid from	from API ID32E
68374	27897 ChEBI	tryptophan	-	energy source	from API ID32E
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68374	16199 ChEBI	urea	-	hydrolysis	from API ID32E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68374	35581 ChEBI	indole	from API ID32E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68374	35581 ChEBI	indole		-	from API ID32E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68374	alpha-galactosidase	-	3.2.1.22	from API ID32E
68374	alpha-glucosidase	-	3.2.1.20	from API ID32E
68374	alpha-maltosidase	-		from API ID32E
68374	arginine dihydrolase	-	3.5.3.6	from API ID32E
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68374	beta-galactosidase	-	3.2.1.23	from API ID32E
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68374	beta-glucosidase	-	3.2.1.21	from API ID32E
68374	beta-glucuronidase	-	3.2.1.31	from API ID32E
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68374	L-aspartate arylamidase	-	3.4.11.21	from API ID32E
68374	lipase	-		from API ID32E
68374	lysine decarboxylase	-	4.1.1.18	from API ID32E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68374	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API ID32E
68374	ornithine decarboxylase	-	4.1.1.17	from API ID32E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68374	urease	-	3.5.1.5	from API ID32E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
992	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API ID32E

@ref	ODC	ADH (Arg)	LDC (Lys)	URE	LARL	GAT	5KG	LipaseLIP	Phenol red (Acidification)RP	beta GLU	MAN	MAL	ADO	PLE	beta GUR	MNT	IND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta GAL	GLU	SAC	LARA	DARL	alpha GLU	alpha GAL	TRE	RHA	INO	CEL	SOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
44438	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

44438

Sample typeSea water

Interaction and safety

Sequence information

Genome-based predictions

Literature

References

#992	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2170
#44438	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 1829
#68368	Automatically annotated from API 20E .
#68374	Automatically annotated from API ID32E .

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