Streptomyces albidoflavus DSM 40394 is a mesophilic prokaryote that was isolated from potato scab.
mesophilic genome sequence 16S sequence
SI-ID 14079
| @ref 20215 |
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Last LPSN update
2026-02-09 11:21:32 |
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Kitasatosporales |
| Family Streptomycetaceae |
| Genus Streptomyces |
| Species Streptomyces albidoflavus |
| Full scientific name Streptomyces albidoflavus (Rossi Doria 1891) Waksman and Henrici 1948 (Approved Lists 1980) |
|
Synonyms (14)
Streptomyces griseus subsp. solvifaciens
"Cladothrix odorifera" Streptomyces canescens Streptomyces felleus "Actinomyces sampsonii" Streptomyces sampsonii Streptomyces globisporus subsp. caucasicus "Actinomyces globisporus subsp. caucasicus" Streptomyces champavatii Streptomyces odorifer "Streptothrix coelicolor" Streptomyces limosus Streptomyces coelicolor "Streptotrix albidoflava" |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 9518 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | Medium recipe at MediaDive  | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | obligate aerobe | 98.9 |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 18588 | NaCl | positive | maximum | 7.5 % |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 18588 | 22599 ChEBI | arabinose | + | ||
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 18588 | 62968 ChEBI | cellulose | - | ||
| 68368 | 16947 ChEBI | citrate | - | assimilation | from API 20E |
| 18588 | 28757 ChEBI | fructose | + | ||
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 18588 | 17234 ChEBI | glucose | + | ||
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 18588 | 29864 ChEBI | mannitol | + | ||
| 18588 | 17268 ChEBI | myo-inositol | - | ||
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 18588 | 16634 ChEBI | raffinose | - | ||
| 18588 | 26546 ChEBI | rhamnose | - | ||
| 18588 | 17992 ChEBI | sucrose | - | ||
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| 18588 | 18222 ChEBI | xylose | - |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68368 | beta-galactosidase | - | 3.2.1.23 | from API 20E |
| 68368 | gelatinase | - | from API 20E | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) | |
| #Host Body-Site | #Other | #Wound | |
| #Host Body-Site | #Plant | #Root (Rhizome) |
| 9518 | Sample typepotato scab |
Global distribution of 16S sequence Z76680 (>99% sequence identity) for Streptomyces from Microbeatlas 
 Aquatic Samples |
5 |
 Soil Samples |
39 |
 Animal Samples |
85 |
 Plant Samples |
|
| Total Samples | 129 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 67770 | ASM419575v1 assembly for Streptomyces albidoflavus NBRC 13083 | contig | GCA_004195755   | 1886.39  | 1886 | 67.61 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Streptomyces sampsonii gene for 16S rRNA, partial sequence, strain: NBRC 13083 | AB184299 | 1465 |  | 42239 | |
| 20218 | Streptomyces sampsonii strain DSM40394 16S-23S intergenic spacer region, partial sequence | AF363494 | 308 | | 42239 | |
| 20218 | Streptomyces sampsonii gene for 16S ribosomal RNA, partial sequence, strain: JCM 4516 | D44203 | 120 | | 42239 | |
| 20218 | Streptomyces sampsonii 16S ribosomal RNA gene, partial sequence | EU928970 | 1385 | | 42239 | |
| 20218 | S.sampsonii (DSM 40394T) 16S rRNA gene | Z76680 | 1476 | | 42239 | |
| 9518 | Streptomyces sampsonii 16S ribosomal RNA, complete sequence | D63871 | 1531 | | 42239 |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Unravelling the outcome of L-glutaminase produced by Streptomyces sp. strain 5 M as an anti-neoplasm activity. | Hassan MG, El-Sayyad GS, Abdel-Monem MO, Malash MN, Kishk MA, El Awady ME, El-Khonezy MI. | Microb Cell Fact | 10.1186/s12934-024-02606-8 | 2025 | | |
| Genetics | Genomic insights into biosynthesis and adaptation in the bioactive marine bacterium Streptomyces albidoflavus VIP-1 from the Red Sea. | Sedeek AM, Elfeky H, Hanora AS, Solyman SM. | BMC Microbiol | 10.1186/s12866-025-04109-x | 2025 | |
| Genetics | Population Genomics Insights into Adaptive Evolution and Ecological Differentiation in Streptomycetes. | Li Y, Pinto-Tomas AA, Rong X, Cheng K, Liu M, Huang Y. | Appl Environ Microbiol | 10.1128/aem.02555-18 | 2019 | |
| Genetics | The Genome Analysis of the Human Lung-Associated Streptomyces sp. TR1341 Revealed the Presence of Beneficial Genes for Opportunistic Colonization of Human Tissues. | Lara AC, Corretto E, Kotrbova L, Lorenc F, Petrickova K, Grabic R, Chronakova A. | Microorganisms | 10.3390/microorganisms9081547 | 2021 | |
| Genetics | Genome Mining Coupled with OSMAC-Based Cultivation Reveal Differential Production of Surugamide A by the Marine Sponge Isolate Streptomyces sp. SM17 When Compared to Its Terrestrial Relative S. albidoflavus J1074. | Almeida EL, Kaur N, Jennings LK, Carrillo Rincon AF, Jackson SA, Thomas OP, Dobson ADW. | Microorganisms | 10.3390/microorganisms7100394 | 2019 | |
| Pathogenicity | Antimicrobial Resistance and Plasmid Profile of Bacterial Strains Isolated from the Urbanized Eltsovka-1 River (Russia). | Lobova TI, Yemelyanova E, Andreeva IS, Puchkova LI, Repin VY. | Microb Drug Resist | 10.1089/mdr.2014.0203 | 2015 | |
| The Effects of a High Concentration of Dissolved Oxygen on Actinobacteria from Lake Baikal. | Dmitrieva ME, Malygina EV, Belyshenko AY, Shelkovnikova VN, Imidoeva NA, Morgunova MM, Telnova TY, Vlasova AA, Axenov-Gribanov DV. | Metabolites | 10.3390/metabo13070830 | 2023 | | |
| Enzymology | Metabolomic study of marine Streptomyces sp.: Secondary metabolites and the production of potential anticancer compounds. | Tangerina MMP, Furtado LC, Leite VMB, Bauermeister A, Velasco-Alzate K, Jimenez PC, Garrido LM, Padilla G, Lopes NP, Costa-Lotufo LV, Pena Ferreira MJ. | PLoS One | 10.1371/journal.pone.0244385 | 2020 | |
| Phylogeny | Phylogenetic relationships in the family Streptomycetaceae using multi-locus sequence analysis. | Labeda DP, Dunlap CA, Rong X, Huang Y, Doroghazi JR, Ju KS, Metcalf WW. | Antonie Van Leeuwenhoek | 10.1007/s10482-016-0824-0 | 2017 | |
| Phylogeny | Discrimination of Streptomyces albidoflavus strains based on the size and number of 16S-23S ribosomal DNA intergenic spacers. | Hain T, Ward-Rainey N, Kroppenstedt RM, Stackebrandt E, Rainey FA. | Int J Syst Bacteriol | 10.1099/00207713-47-1-202 | 1997 | |
| Enzymology | Purification and characterization of a keratinolytic serine proteinase from Streptomyces albidoflavus. | Bressollier P, Letourneau F, Urdaci M, Verneuil B. | Appl Environ Microbiol | 10.1128/aem.65.6.2570-2576.1999 | 1999 | |
| Genetics | Comparative Genomics of Marine Sponge-Derived Streptomyces spp. Isolates SM17 and SM18 With Their Closest Terrestrial Relatives Provides Novel Insights Into Environmental Niche Adaptations and Secondary Metabolite Biosynthesis Potential. | Almeida EL, Carrillo Rincon AF, Jackson SA, Dobson ADW. | Front Microbiol | 10.3389/fmicb.2019.01713 | 2019 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive14903.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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