Name: Streptomyces albidoflavus Bö. Br. 136
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14891

Type strain:

Species: Streptomyces albidoflavus

Strain Designation: Bö. Br. 136

Culture col. no.: DSM 40131, ATCC 19778, CBS 531.68, IFO 12790, ISP 5131, JCM 4393, NBRC 12790, RIA 1058, BCRC 13700, KCTC 9033, LMG 8570, NCIMB 12976, NRRL B-5413, VKM Ac-850

Strain history: KCC S-0393 <-- IFO 12790 <-- SAJ <-- ISP 5131 <-- P. Wilde, Bö. Br. 136.

NCBI tax ID(s): 1886 (species), 1947 (species)

SI-ID 305050

LMG 8570, ATCC 19778, CCRC 13700, DSM 40131, IFO 12790, JCM 4393, NCIMB 12976, NRRL B-5413, VKM Ac-850, CBS 531.68, KCTC 9033, NBRC 12790, BCRC 13700, KACC 20062

Special Collections

Other strains from Streptomyces albidoflavus

Section

Streptomyces albidoflavus Bö. Br. 136 is a spore-forming, Gram-positive bacterium that builds an aerial mycelium and was isolated from soil.

Gram-positive
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces albidoflavus**
	Full Scientific Name (LPSN)	Streptomyces albidoflavus (Rossi Doria 1891) Waksman and Henrici 1948 (Approved Lists 1980)

	Synonym	Streptomyces griseus subsp. solvifaciens
	Synonym	Streptomyces limosus
	Synonym	"Actinomyces* sampsonii"*
	Synonym	"Actinomyces* globisporus subsp. caucasicus"*
	Synonym	"Cladothrix* odorifera"*
	Synonym	Streptomyces felleus
	Synonym	Streptomyces sampsonii
	Synonym	Streptomyces odorifer
	Synonym	Streptomyces coelicolor
	Synonym	"Streptothrix* coelicolor"*
	Synonym	"Streptotrix* albidoflava"*
	Synonym	Streptomyces globisporus subsp. caucasicus
	Synonym	Streptomyces canescens
	Synonym	Streptomyces champavatii

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %91.48

[Ref.: #69480]	Motility	no Confidence in %91.5

[Ref.: #19807]	Colony color	Yellowish-brown
[Ref.: #19807]	Incubation period	10-14 days
[Ref.: #19807]	Cultivation medium used	ISP 2

[Ref.: #19807]	Colony color	Yellow
[Ref.: #19807]	Incubation period	10-14 days
[Ref.: #19807]	Cultivation medium used	ISP 3

[Ref.: #19807]	Colony color	Yellow
[Ref.: #19807]	Incubation period	10-14 days
[Ref.: #19807]	Cultivation medium used	ISP 4

[Ref.: #19807]	Colony color	Yellow
[Ref.: #19807]	Incubation period	10-14 days
[Ref.: #19807]	Cultivation medium used	ISP 5

[Ref.: #19807]	Multicellular complex forming ability	yes
[Ref.: #19807]	Multicellular complex name	Aerial Mycelium
[Ref.: #19807]	Multicellular complex color	White
[Ref.: #19807]	Medium Name (multicellularity)	ISP 2

[Ref.: #19807]	Multicellular complex forming ability	yes
[Ref.: #19807]	Multicellular complex name	Aerial Mycelium
[Ref.: #19807]	Multicellular complex color	Ivory
[Ref.: #19807]	Medium Name (multicellularity)	ISP 3

[Ref.: #19807]	Multicellular complex forming ability	yes
[Ref.: #19807]	Multicellular complex name	Aerial Mycelium
[Ref.: #19807]	Multicellular complex color	Ivory
[Ref.: #19807]	Medium Name (multicellularity)	ISP 4

[Ref.: #19807]	Multicellular complex forming ability	yes
[Ref.: #19807]	Multicellular complex name	Aerial Mycelium
[Ref.: #19807]	Multicellular complex color	White
[Ref.: #19807]	Medium Name (multicellularity)	ISP 5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9334]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9334]

Culture medium growth

[Ref.: #9334]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9334]

Culture medium composition

expand / minimize

[Ref.: #19807]

Culture medium

ISP 2

[Ref.: #19807]

Culture medium growth

[Ref.: #19807]

Culture medium composition

expand / minimize

[Ref.: #19807]

Culture medium

ISP 3

[Ref.: #19807]

Culture medium growth

[Ref.: #19807]

Culture medium composition

expand / minimize

[Ref.: #19807]

Culture medium

ISP 4

[Ref.: #19807]

Culture medium growth

[Ref.: #19807]

Culture medium composition

expand / minimize

[Ref.: #19807]

Culture medium

ISP 5

[Ref.: #19807]

Culture medium growth

[Ref.: #19807]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #9334]	growth	28 °C
[Ref.: #19807]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19807]	Spore description	Formation of spore chains: rectiflixibilis, spore surface: smooth
[Ref.: #19807]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %94.057
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #9334]

Name of produced compound

limocrocin

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19807]		NaCl		maximum	7.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19807]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19807]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #19807]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19807]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19807]	mannitol ChEBI	+
[Ref.: #19807]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19807]	raffinose ChEBI	-
[Ref.: #19807]	rhamnose ChEBI	-
[Ref.: #19807]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	+	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19807]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	limocrocin	yes
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	yes	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		+	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19807]	520	-	-	-	-	+	-	-	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9334]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Z76679 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	5
Soil Samples	39
Animal Samples	85
Plant Samples
Total Samples	129

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9334]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19807]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #9334]	Streptomyces limosus gene for 16S rRNA, partial sequence, strain: NBRC 12790	AB184147	1477	GenBank ENA	1947 tax ID
[Ref.: #20218]	S.limosus (DSM 40131T) 16S rRNA gene	Z76679	1476	GenBank ENA	1947 tax ID	*
[Ref.: #20218]	Streptomyces limosus strain DSM 40131 16S ribosomal RNA gene, partial sequence	GU383118	781	GenBank ENA	1947 tax ID	*
[Ref.: #20218]	Streptomyces limosus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4393	D44108	120	GenBank ENA	1947 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces albidoflavus NBRC 12790	GCA_004195885	contig	GenBank ENA	1886 tax ID
[Ref.: #66792]	Streptomyces albidoflavus strain NBRC 12790	1886.45	wgs	PATRIC	1886 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces albidoflavus strain NBRC 12790 PATRIC: 1886.45
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces albidoflavus strain NBRC 12790 PATRIC: 1886.45
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.48	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.894	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	94.057	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.703	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91.5	no

Availability in culture collections External links

[Ref.: #9334]

Culture collection no.

DSM 40131, ATCC 19778, CBS 531.68, IFO 12790, ISP 5131, JCM 4393, NBRC 12790, RIA 1058, BCRC 13700, KCTC 9033, LMG 8570, NCIMB 12976, NRRL B-5413, VKM Ac-850

[Ref.: #84000]

SI-ID 305050

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Cloning, characterization and regulation of an alpha-amylase gene from Streptomyces limosus.	Virolle MJ, Bibb MJ	Mol Microbiol	10.1111/j.1365-2958.1988.tb00021.x	1988	*

References

#9334

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40131

#19807

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84000

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID305050.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces albidoflavus strain NBRC 12790

Streptomyces albidoflavus strain NBRC 12790

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