Name: Streptomyces albidoflavus DSM 40347
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14893

Type strain:

Species: Streptomyces albidoflavus

Culture col. no.: DSM 40347, ATCC 6246, CBS 666.72, IFO 13365, IMRU 3334, ISP 5347, JCM 4198, JCM 4803, NBRC 13365, NRRL B-1328, RIA 1326, BCRC 13704, CECT 3178, IMET 41377, KCTC 9872, LMG 8572, VKM Ac-748

Strain history: KCC S-0198 <-- NRRL B-1328.

NCBI tax ID(s): 53450 (species)

SI-ID 389288

LMG 8572, ATCC 6246, CCRC 13704, IFO 13365, IMET 41377, JCM 4198, JCM 4803, NRRL B-1328, VKM Ac-748, CBS 666.72, CECT 3178, KCTC 9872, NBRC 13365, BCRC 13704, DSM 40347

Special Collections

Other strains from Streptomyces albidoflavus

Section

Streptomyces albidoflavus DSM 40347 is a spore-forming bacterium that builds an aerial mycelium.

spore-forming
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces albidoflavus**
	Full Scientific Name (LPSN)	Streptomyces albidoflavus (Rossi Doria 1891) Waksman and Henrici 1948 (Approved Lists 1980)

	Synonym	Streptomyces griseus subsp. solvifaciens
	Synonym	Streptomyces limosus
	Synonym	"Actinomyces* sampsonii"*
	Synonym	"Actinomyces* globisporus subsp. caucasicus"*
	Synonym	"Cladothrix* odorifera"*
	Synonym	Streptomyces felleus
	Synonym	Streptomyces sampsonii
	Synonym	Streptomyces odorifer
	Synonym	Streptomyces coelicolor
	Synonym	"Streptothrix* coelicolor"*
	Synonym	"Streptotrix* albidoflava"*
	Synonym	Streptomyces globisporus subsp. caucasicus
	Synonym	Streptomyces canescens
	Synonym	Streptomyces champavatii

Information on morphological and physiological properties Morphology

[Ref.: #19812]	Colony color	Yellowish-brown
[Ref.: #19812]	Incubation period	10-14 days
[Ref.: #19812]	Cultivation medium used	ISP 2

[Ref.: #19812]	Colony color	Yellow
[Ref.: #19812]	Incubation period	10-14 days
[Ref.: #19812]	Cultivation medium used	ISP 3

[Ref.: #19812]	Colony color	Yellow
[Ref.: #19812]	Incubation period	10-14 days
[Ref.: #19812]	Cultivation medium used	ISP 4

[Ref.: #19812]	Colony color	Yellow brown
[Ref.: #19812]	Incubation period	10-14 days
[Ref.: #19812]	Cultivation medium used	ISP 5

[Ref.: #19812]	Multicellular complex forming ability	yes
[Ref.: #19812]	Multicellular complex name	Aerial Mycelium
[Ref.: #19812]	Multicellular complex color	Yellow
[Ref.: #19812]	Medium Name (multicellularity)	ISP 2

[Ref.: #19812]	Multicellular complex forming ability	yes
[Ref.: #19812]	Multicellular complex name	Aerial Mycelium
[Ref.: #19812]	Multicellular complex color	Yellow
[Ref.: #19812]	Medium Name (multicellularity)	ISP 3

[Ref.: #19812]	Multicellular complex forming ability	yes
[Ref.: #19812]	Multicellular complex name	Aerial Mycelium
[Ref.: #19812]	Multicellular complex color	Yellow
[Ref.: #19812]	Medium Name (multicellularity)	ISP 4

[Ref.: #19812]	Multicellular complex forming ability	yes
[Ref.: #19812]	Multicellular complex name	Aerial Mycelium
[Ref.: #19812]	Multicellular complex color	White
[Ref.: #19812]	Medium Name (multicellularity)	ISP 5

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

[Ref.: #19812]

Culture medium

ISP 2

[Ref.: #19812]

Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 3

[Ref.: #19812]

Culture medium growth

[Ref.: #19812]

Culture medium composition

expand / minimize

[Ref.: #19812]

Culture medium

ISP 4

[Ref.: #19812]

Culture medium growth

[Ref.: #19812]

Culture medium composition

expand / minimize

[Ref.: #19812]

Culture medium

ISP 5

[Ref.: #19812]

Culture medium growth

[Ref.: #19812]

Culture medium composition

expand / minimize

[Ref.: #9475]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9475]	growth	28 °C
[Ref.: #19812]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19812]	Spore description	Formation of spore chains: rectiflixibilis, spore surface: smooth
[Ref.: #19812]	Ability of spore formation	yes

[Ref.: #9475]	Name of produced compound	restriction endonuclease SodI
[Ref.: #20216]	Name of produced compound	Heptaenic antibiotic
[Ref.: #20216]	Name of produced compound	Endonuclease SodI
[Ref.: #20216]	Name of produced compound	Endonuclease SodII

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19812]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19812]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19812]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #19812]	fructose ChEBI	+/-
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19812]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19812]	mannitol ChEBI	+
[Ref.: #19812]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19812]	raffinose ChEBI	-
[Ref.: #19812]	rhamnose ChEBI	-
[Ref.: #19812]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19812]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19812]	524	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence Z76682 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	5
Soil Samples	39
Animal Samples	85
Plant Samples
Total Samples	129

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9475]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19812]	Biosafety level	1	Risk group (german classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #9475]	S.odorifer (DSM 40347T) 16S rRNA gene	Z76682	1476	GenBank ENA	53450 tax ID
[Ref.: #20218]	Streptomyces odorifer gene for 16S rRNA, partial sequence, strain: NBRC 13365	AB184355	1460	GenBank ENA	53450 tax ID	*
[Ref.: #20218]	Streptomyces odorifer gene for 16S ribosomal RNA, partial sequence, strain: JCM 4803	D44374	120	GenBank ENA	53450 tax ID	*

Availability in culture collections External links

[Ref.: #9475]

Culture collection no.

DSM 40347, ATCC 6246, CBS 666.72, IFO 13365, IMRU 3334, ISP 5347, JCM 4198, JCM 4803, NBRC 13365, NRRL B-1328, RIA 1326, BCRC 13704, CECT 3178, IMET 41377, KCTC 9872, LMG 8572, VKM Ac-748

[Ref.: #84002]

SI-ID 389288

References

#9475

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40347

#19812

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#84002

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389288.1 )

* These data were automatically processed and therefore are not curated

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