Strain identifier

BacDive ID: 14893

Type strain: No

Species: Streptomyces albidoflavus

Strain history: KCC S-0198 <-- NRRL B-1328.

NCBI tax ID(s): 53450 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9 (current version):
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 9 (current version)

General

@ref: 9475

BacDive-ID: 14893

DSM-Number: 40347

keywords: 16S sequence, Bacteria, spore-forming

description: Streptomyces albidoflavus DSM 40347 is a spore-forming bacterium that builds an aerial mycelium.

NCBI tax id

  • NCBI tax id: 53450
  • Matching level: species

strain history

@refhistory
9475<- E.B. Shirling, ISP <- S.A. Waksman, IMRU
67770KCC S-0198 <-- NRRL B-1328.

doi: 10.13145/bacdive14893.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces albidoflavus
  • full scientific name: Streptomyces albidoflavus (Rossi Doria 1891) Waksman and Henrici 1948 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Streptomyces griseus subsp. solvifaciens
    20215Streptomyces limosus
    20215Actinomyces sampsonii
    20215Actinomyces globisporus subsp. caucasicus
    20215Cladothrix odorifera
    20215Streptomyces felleus
    20215Streptomyces sampsonii
    20215Streptomyces odorifer
    20215Streptomyces coelicolor
    20215Streptothrix coelicolor
    20215Streptotrix albidoflava
    20215Streptomyces globisporus subsp. caucasicus
    20215Streptomyces canescens
    20215Streptomyces champavatii

@ref: 9475

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces albidoflavus

full scientific name: Streptomyces albidoflavus (Rossi Doria 1891) Waksman and Henrici 1948 emend. Nouioui et al. 2018

type strain: no

Morphology

colony morphology

@refcolony colorincubation periodmedium used
19812Yellowish-brown10-14 daysISP 2
19812Yellow10-14 daysISP 3
19812Yellow10-14 daysISP 4
19812Yellow brown10-14 daysISP 5

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
19812yesAerial MyceliumYellowISP 2
19812yesAerial MyceliumYellowISP 3
19812yesAerial MyceliumYellowISP 4
19812yesAerial MyceliumWhiteISP 5

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9475GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19812ISP 2yesName: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19812ISP 3yesName: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19812ISP 4yesName: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19812ISP 5yesName: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
9475STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf

culture temp

@refgrowthtypetemperature
19812positiveoptimum30
9475positivegrowth28
67770positivegrowth28

Physiology and metabolism

spore formation

  • @ref: 19812
  • spore description: Formation of spore chains: rectiflixibilis, spore surface: smooth
  • spore formation: yes

compound production

@refcompound
9475restriction endonuclease SodI
20216Heptaenic antibiotic
20216Endonuclease SodI
20216Endonuclease SodII

halophily

  • @ref: 19812
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 2.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1981262968cellulose-
1981216634raffinose-
1981226546rhamnose-
1981228757fructose+/-
1981229864mannitol+
1981217268myo-inositol-
1981218222xylose+
1981217992sucrose+
1981222599arabinose+
1981217234glucose+
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
19812-----------

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_720.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_287;98_384;99_720&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: Z76682
  • Sequence Identity:
  • Total samples: 129
  • soil counts: 39
  • aquatic counts: 5
  • animal counts: 85

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
94751Risk group (German classification)
198121Risk group (german classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces odorifer gene for 16S rRNA, partial sequence, strain: NBRC 13365AB1843551460nuccore53450
20218Streptomyces odorifer gene for 16S ribosomal RNA, partial sequence, strain: JCM 4803D44374120nuccore53450
9475S.odorifer (DSM 40347T) 16S rRNA geneZ766821476nuccore53450

External links

@ref: 9475

culture collection no.: DSM 40347, ATCC 6246, CBS 666.72, IFO 13365, IMRU 3334, ISP 5347, JCM 4198, JCM 4803, NBRC 13365, NRRL B-1328, RIA 1326, BCRC 13704, CECT 3178, IMET 41377, KCTC 9872, LMG 8572, VKM Ac-748

straininfo link

  • @ref: 84002
  • straininfo: 389288

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9475Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40347)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40347
19812Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40347.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
84002Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389288.1StrainInfo: A central database for resolving microbial strain identifiers