Name: Streptomyces albidoflavus DSM 40841
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14910

Type strain:

Species: Streptomyces albidoflavus

Culture col. no.: DSM 40841, JCM 5066, NRRL B-5682, BCRC 12231, CGMCC 4.1615, IFO 15392, MTCC 1825, NBIMCC 3324, NBRC 15392, NCIMB 12859

Strain history: KCC S-1066 <-- MS 1482 <-- NRRL B-5682 <-- B. N. Uma 1033.

NCBI tax ID(s): 68184 (species)

SI-ID 49807

DSM 40841, JCM 5066, NRRL B-5682, CCRC 12231, IFO 15392, NCIMB 12859, AS 4.1615, NBRC 15392, BCRC 12231, NBIMCC 3324, CGMCC 4.1615

Special Collections

Other strains from Streptomyces albidoflavus

Section

Streptomyces albidoflavus DSM 40841 is a spore-forming, Gram-positive bacterium that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production
Gram-positive
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces albidoflavus**
	Full Scientific Name (LPSN)	Streptomyces albidoflavus (Rossi Doria 1891) Waksman and Henrici 1948 (Approved Lists 1980)

	Synonym	Streptomyces griseus subsp. solvifaciens
	Synonym	Streptomyces limosus
	Synonym	"Actinomyces* sampsonii"*
	Synonym	"Actinomyces* globisporus subsp. caucasicus"*
	Synonym	"Cladothrix* odorifera"*
	Synonym	Streptomyces felleus
	Synonym	Streptomyces sampsonii
	Synonym	Streptomyces odorifer
	Synonym	Streptomyces coelicolor
	Synonym	"Streptothrix* coelicolor"*
	Synonym	"Streptotrix* albidoflava"*
	Synonym	Streptomyces globisporus subsp. caucasicus
	Synonym	Streptomyces canescens
	Synonym	Streptomyces champavatii

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %90.829

[Ref.: #69480]	Motility	no Confidence in %91.5

[Ref.: #18679]	Colony color	Dark brown
[Ref.: #18679]	Incubation period	10-14 days
[Ref.: #18679]	Cultivation medium used	ISP 2

[Ref.: #18679]	Colony color	Beige (1001)
[Ref.: #18679]	Incubation period	10-14 days
[Ref.: #18679]	Cultivation medium used	ISP 3

[Ref.: #18679]	Colony color	Yellow
[Ref.: #18679]	Incubation period	10-14 days
[Ref.: #18679]	Cultivation medium used	ISP 4

[Ref.: #18679]	Colony color	Brown
[Ref.: #18679]	Incubation period	10-14 days
[Ref.: #18679]	Cultivation medium used	ISP 5

[Ref.: #18679]	Colony color	Yellow
[Ref.: #18679]	Incubation period	10-14 days
[Ref.: #18679]	Cultivation medium used	ISP 6

[Ref.: #18679]	Colony color	Yellow
[Ref.: #18679]	Incubation period	10-14 days
[Ref.: #18679]	Cultivation medium used	ISP 7

[Ref.: #18679]	Multicellular complex forming ability	yes
[Ref.: #18679]	Multicellular complex name	Aerial Mycelium
[Ref.: #18679]	Multicellular complex color	White
[Ref.: #18679]	Medium Name (multicellularity)	ISP 2

[Ref.: #18679]	Multicellular complex forming ability	yes
[Ref.: #18679]	Multicellular complex name	Aerial Mycelium
[Ref.: #18679]	Multicellular complex color	White
[Ref.: #18679]	Medium Name (multicellularity)	ISP 3

[Ref.: #18679]	Multicellular complex forming ability	yes
[Ref.: #18679]	Multicellular complex name	Aerial Mycelium
[Ref.: #18679]	Multicellular complex color	White
[Ref.: #18679]	Medium Name (multicellularity)	ISP 4

[Ref.: #18679]	Multicellular complex forming ability	yes
[Ref.: #18679]	Multicellular complex name	Aerial Mycelium
[Ref.: #18679]	Multicellular complex color	Yellow
[Ref.: #18679]	Medium Name (multicellularity)	ISP 5

[Ref.: #18679]	Multicellular complex forming ability	no
[Ref.: #18679]	Medium Name (multicellularity)	ISP 6

[Ref.: #18679]	Multicellular complex forming ability	yes
[Ref.: #18679]	Multicellular complex name	Aerial Mycelium
[Ref.: #18679]	Multicellular complex color	White
[Ref.: #18679]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9841]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9841]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #9841]

Culture medium composition

expand / minimize

[Ref.: #18679]

Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 6

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Culture medium growth

[Ref.: #18679]

Culture medium composition

expand / minimize

[Ref.: #18679]

Culture medium

ISP 7

[Ref.: #18679]

Culture medium growth

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Culture medium composition

expand / minimize

[Ref.: #9841]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9841]	growth	28 °C
[Ref.: #18679]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #18679]	Spore description	Formation of spore chains (retinaculiapetri), spore surface smooth
[Ref.: #18679]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %94.55
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #9841]	Name of produced compound	champamycins A and B
[Ref.: #9841]	Name of produced compound	champavatin
[Ref.: #67770]	Name of produced compound	Champamycin A
[Ref.: #67770]	Name of produced compound	champavatin

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18679]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18679]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18679]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18679]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18679]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #18679]	mannitol ChEBI	+
[Ref.: #18679]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #18679]	raffinose ChEBI	-
[Ref.: #18679]	rhamnose ChEBI	-
[Ref.: #18679]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18679]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	champamycin B	yes
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18679]	187	+	+	+	+	+	-	+	+	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence AB184643 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	5
Soil Samples	39
Animal Samples	85
Plant Samples
Total Samples	129

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18679]	Biosafety level	1	German classification
[Ref.: #9841]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces champavatii gene for 16S rRNA, partial sequence, strain: NBRC 15392	AB184643	1459	GenBank ENA	68184 tax ID
[Ref.: #9841]	Streptomyces champavatii strain NRRL B-5682 16S ribosomal RNA gene, partial sequence	DQ026642	1567	GenBank ENA	68184 tax ID
[Ref.: #20218]	Streptomyces champavatii gene for 16S ribosomal RNA, partial sequence, strain: JCM 5066	D44435	120	GenBank ENA	68184 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces albidoflavus CGMCC 4.1615	GCA_004196155	contig	GenBank ENA	1886 tax ID
[Ref.: #66792]	Streptomyces albidoflavus strain CGMCC 4.1615	1886.60	wgs	PATRIC	1886 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces albidoflavus strain CGMCC 4.1615 PATRIC: 1886.60
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces albidoflavus strain CGMCC 4.1615 PATRIC: 1886.60
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.829	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.891	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	94.55	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.697	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91.5	no

Availability in culture collections External links

[Ref.: #9841]

Culture collection no.

DSM 40841, JCM 5066, NRRL B-5682, BCRC 12231, CGMCC 4.1615, IFO 15392, MTCC 1825, NBIMCC 3324, NBRC 15392, NCIMB 12859

[Ref.: #84019]

SI-ID 49807

References

#9841

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40841

#18679

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84019

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49807.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces albidoflavus strain CGMCC 4.1615

Streptomyces albidoflavus strain CGMCC 4.1615

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