Name: Streptomyces albidoflavus DSM 40233
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14892

Type strain:

Species: Streptomyces albidoflavus

Culture col. no.: DSM 40233, ATCC 23899, CBS 210.27, CBS 795.68, CUB 100, IFO 12854, ISP 5233, JCM 4357, NBRC 12854, RIA 1173, CCUG 11110, BCRC 12067, CGMCC 4.1658, KACC 20100, LMG 8571, NCAIM B.02135, NCIMB 9798, NRRL B-2812, PCM 2324, VKM Ac-738, VTT E-001625

Strain history: KCC S-0357 <-- IFO 12854 <-- SAJ <-- ISP 5233 <-- CBS R. Müller's strain.

NCBI tax ID(s): 1886 (species), 1902 (species)

SI-ID 265435

LMG 8571, ATCC 23899, CCRC 12067, CCUG 11110, DSM 40233, IFO 12854, JCM 4357, NCIMB 9798, NRRL B-2812, VKM Ac-738, NCIB 9798, CBS 210.27, AS 4.1658, NBRC 12854, BCRC 12067, KACC 20100, CGMCC 4.1658, VTT E-001625

Special Collections

Other strains from Streptomyces albidoflavus

Section

Streptomyces albidoflavus DSM 40233 is an aerobe, spore-forming, Gram-positive bacterium of the family Streptomycetaceae.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces albidoflavus**
	Full Scientific Name (LPSN)	Streptomyces albidoflavus (Rossi Doria 1891) Waksman and Henrici 1948 (Approved Lists 1980)

	Synonym	Streptomyces griseus subsp. solvifaciens
	Synonym	Streptomyces limosus
	Synonym	"Actinomyces* sampsonii"*
	Synonym	"Actinomyces* globisporus subsp. caucasicus"*
	Synonym	"Cladothrix* odorifera"*
	Synonym	Streptomyces felleus
	Synonym	Streptomyces sampsonii
	Synonym	Streptomyces odorifer
	Synonym	Streptomyces coelicolor
	Synonym	"Streptothrix* coelicolor"*
	Synonym	"Streptotrix* albidoflava"*
	Synonym	Streptomyces globisporus subsp. caucasicus
	Synonym	Streptomyces canescens
	Synonym	Streptomyces champavatii

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %91.526

[Ref.: #69480]	Motility	no Confidence in %90.5

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9394]	growth	28 °C
[Ref.: #18565]	optimum	30 °C
[Ref.: #45397]	growth	26 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #45397]

Oxygen tolerance

aerobe

[Ref.: #69480]	Ability of spore formation	yes Confidence in %94.56
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #9394]	Name of produced compound	amylocyanine pigment
[Ref.: #9394]	Name of produced compound	heptaene
[Ref.: #9394]	Name of produced compound	indochrom

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18565]		NaCl		maximum	7.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18565]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18565]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18565]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18565]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #18565]	mannitol ChEBI	+
[Ref.: #18565]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18565]	raffinose ChEBI	-
[Ref.: #18565]	rhamnose ChEBI	-
[Ref.: #18565]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18565]	xylose ChEBI	+/-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18565]	124	-	-	-	-	+	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence Z76678 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	5
Soil Samples	39
Animal Samples	85
Plant Samples
Total Samples	129

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18565]	Biosafety level	1	German classification
[Ref.: #9394]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #9394]	Streptomyces coelicolor gene for 16S rRNA, partial sequence, strain: NBRC 12854	AB184196	1476	GenBank ENA	1902 tax ID
[Ref.: #20218]	S.coelicolor (DSM 40233T) 16S rRNA gene	Z76678	1476	GenBank ENA	1902 tax ID	*
[Ref.: #20218]	Streptomyces coelicolor strain DSM40233 16S-23S intergenic spacer region, partial sequence	AF363491	304	GenBank ENA	1902 tax ID	*
[Ref.: #20218]	Streptomyces coelicolor strain DSM 40233 16S ribosomal RNA gene, partial sequence	GU383131	781	GenBank ENA	1902 tax ID	*
[Ref.: #20218]	Streptomyces coelicolor strain DSM 40233 16S ribosomal RNA gene, partial sequence	FJ406047	1396	GenBank ENA	1902 tax ID	*
[Ref.: #20218]	Streptomyces coelicolor gene for 16S ribosomal RNA, partial sequence, strain: JCM 4357	D44075	120	GenBank ENA	1902 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces albidoflavus DSM 40233	GCA_004195775	contig	GenBank ENA	1886 tax ID
[Ref.: #66792]	Streptomyces albidoflavus NBRC 12854	GCA_020521315	contig	GenBank ENA	1886 tax ID	*
[Ref.: #66792]	Streptomyces albidoflavus strain DSM 40233	1886.40	wgs	PATRIC	1886 tax ID	*
[Ref.: #66792]	Streptomyces albidoflavus strain NBRC 12854	1886.115	wgs	PATRIC	1886 tax ID	*
[Ref.: #66792]	Streptomyces albidoflavus strain NBRC 12854	1886.102	wgs	PATRIC	1886 tax ID	*
[Ref.: #66792]	Streptomyces albidoflavus strain NBRC 12854	1886.114	wgs	PATRIC	1886 tax ID	*

[Ref.: #67770]	GC-content	72.8 mol%	Buoyant density centrifugation (BD)
[Ref.: #67770]	GC-content	73 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	73 mol%	fluorimetric

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces albidoflavus strain DSM 40233 PATRIC: 1886.40
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces albidoflavus strain DSM 40233 PATRIC: 1886.40
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.526	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.381	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	94.56	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.564	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.5	no

Availability in culture collections External links

[Ref.: #9394]

Culture collection no.

DSM 40233, ATCC 23899, CBS 210.27, CBS 795.68, CUB 100, IFO 12854, ISP 5233, JCM 4357, NBRC 12854, RIA 1173, CCUG 11110, BCRC 12067, CGMCC 4.1658, KACC 20100, LMG 8571, NCAIM B.02135, NCIMB 9798, NRRL B-2812, PCM 2324, VKM Ac-738, VTT E-001625

[Ref.: #84001]

SI-ID 265435

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	A sensitive pH indicator-based spectrophotometric assay for PHB depolymerase activity on microtiter plates.	Camacho-Ruiz MA, Muller-Santos M, Hernandez-Mancillas XD, Armenta-Perez VP, Zamora-Gonzalez E, Rodriguez JA	Anal Methods	10.1039/d0ay00840k	2020	*

References

#9394

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40233

#18565

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#45397 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 11110

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84001

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID265435.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces albidoflavus strain DSM 40233

Streptomyces albidoflavus strain DSM 40233

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